Variant report

Variant	rs199672557
Chromosome Location	chr2:32304693-32304694
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:32299913..32303134-chr2:32303836..32306094,3	MCF-7	breast:
2	chr2:32288016..32290061-chr2:32304327..32306371,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000021574	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532648	chr2:31591498-32312698	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
2	nsv949102	chr2:32030307-33011548	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	nsv833670	chr2:32295778-32481857	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv873778	chr2:32297984-32409007	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv3361548	chr2:32304380-32304820	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3365207	chr2:32304400-32304790	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:32289600-32330800	Weak transcription	Spleen	Spleen
2	chr2:32289800-32313800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr2:32289800-32314600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:32289800-32315800	Weak transcription	Colon Smooth Muscle	Colon
5	chr2:32289800-32319400	Weak transcription	Aorta	Aorta
6	chr2:32289800-32319400	Weak transcription	Pancreas	Pancrea
7	chr2:32289800-32330800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr2:32290000-32315800	Weak transcription	Fetal Kidney	kidney
9	chr2:32290000-32315800	Weak transcription	HSMM	muscle
10	chr2:32290000-32316600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr2:32290000-32318600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr2:32290200-32313800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr2:32290200-32330800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr2:32290400-32313400	Weak transcription	Fetal Thymus	thymus
15	chr2:32290400-32313800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr2:32290400-32315000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr2:32290400-32315000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr2:32290400-32315000	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr2:32290400-32331000	Weak transcription	Rectal Smooth Muscle	rectum
20	chr2:32290400-32353400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr2:32290600-32314800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr2:32290600-32330800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr2:32290800-32313600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr2:32290800-32313800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr2:32290800-32317200	Weak transcription	Brain Hippocampus Middle	brain
26	chr2:32290800-32330200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr2:32291000-32314800	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr2:32291000-32330400	Weak transcription	Brain Anterior Caudate	brain
29	chr2:32291000-32330800	Weak transcription	Brain Angular Gyrus	brain
30	chr2:32291000-32332600	Weak transcription	A549	lung
31	chr2:32291400-32327600	Weak transcription	Hela-S3	cervix
32	chr2:32291400-32331000	Weak transcription	Brain Cingulate Gyrus	brain
33	chr2:32291600-32322000	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr2:32291600-32330800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr2:32291600-32330800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr2:32291600-32332200	Weak transcription	HUVEC	blood vessel
37	chr2:32291800-32313200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr2:32292000-32314600	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr2:32292000-32330800	Weak transcription	Lung	lung
40	chr2:32292000-32343200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr2:32292400-32314800	Weak transcription	Placenta	Placenta
42	chr2:32292400-32330800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr2:32292600-32313600	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr2:32292600-32317600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr2:32292600-32353800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr2:32294600-32314200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr2:32294600-32325000	Weak transcription	Dnd41	blood
48	chr2:32294800-32313200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr2:32295000-32313000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr2:32295000-32330200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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