Variant report

Variant	rs199694782
Chromosome Location	chr11:59378104-59378105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:59332513..59335346-chr11:59377143..59379065,2	K562	blood:
2	chr11:59358338..59361390-chr11:59376004..59379219,3	K562	blood:
3	chr11:59373266..59379105-chr11:59379660..59383510,5	MCF-7	breast:
4	chr11:59367319..59373347-chr11:59375671..59384148,16	K562	blood:
5	chr11:59340962..59342782-chr11:59376375..59380389,3	K562	blood:

Variant related genes	Relation type
ENSG00000110048	Chromatin interaction
ENSG00000255008	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1833978	chr11:59377543-59383631	Strong transcription Enhancers Active TSS Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1842135	chr11:59377543-59383631	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:59334200-59382000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr11:59340800-59378200	Strong transcription	Fetal Thymus	thymus
3	chr11:59342000-59379000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:59342200-59378200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr11:59343600-59378400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:59343800-59382000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:59350200-59378200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:59352600-59378200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:59352800-59378400	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr11:59353200-59378200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:59353200-59378400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr11:59353400-59378200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:59353400-59378200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr11:59353400-59378800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr11:59353600-59378200	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr11:59353600-59378600	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr11:59353800-59378200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr11:59353800-59378200	Strong transcription	Duodenum Mucosa	Duodenum
19	chr11:59353800-59378400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:59353800-59379400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr11:59354200-59378200	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:59354400-59379400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:59354600-59379600	Strong transcription	Thymus	Thymus
24	chr11:59354800-59378200	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr11:59354800-59378400	Strong transcription	Dnd41	blood
26	chr11:59355800-59379800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:59357200-59378200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:59357400-59378200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr11:59357400-59379000	Strong transcription	GM12878-XiMat	blood
30	chr11:59357600-59378200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
31	chr11:59357600-59378200	Strong transcription	Primary B cells from peripheral blood	blood
32	chr11:59357600-59378200	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr11:59357600-59378200	Strong transcription	HUVEC	blood vessel
34	chr11:59357600-59379200	Strong transcription	K562	blood
35	chr11:59357800-59380600	Strong transcription	Primary B cells from cord blood	blood
36	chr11:59358000-59378200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr11:59358400-59382000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr11:59358800-59378400	Strong transcription	Osteobl	bone
39	chr11:59359200-59378200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr11:59359200-59378200	Strong transcription	Primary T cells from cord blood	blood
41	chr11:59359200-59378200	Strong transcription	Colonic Mucosa	Colon
42	chr11:59359200-59378600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr11:59363400-59378200	Strong transcription	Fetal Brain Female	brain
44	chr11:59365600-59378200	Strong transcription	HSMM	muscle
45	chr11:59365600-59378400	Strong transcription	HUES48 Cell Line	embryonic stem cell
46	chr11:59365800-59378200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr11:59367400-59378200	Strong transcription	Fetal Stomach	stomach
48	chr11:59367800-59378600	Weak transcription	Stomach Mucosa	stomach
49	chr11:59368200-59378400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr11:59369400-59378400	Strong transcription	Placenta	Placenta

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