Variant report

Variant	rs199738056
Chromosome Location	chr14:65216884-65216885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818582	chr14:65172898-65256685	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1035833	chr14:65176371-65246181	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	esv1801406	chr14:65193725-65264416	Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
4	nsv902023	chr14:65200821-65243885	Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	nsv902024	chr14:65200821-65244950	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
6	esv3363315	chr14:65216799-65218847	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65201000-65221800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr14:65202200-65217400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr14:65204000-65217200	Strong transcription	NHEK	skin
4	chr14:65204200-65217400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:65204400-65217000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:65204600-65219800	Strong transcription	Fetal Intestine Small	intestine
7	chr14:65208600-65219000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr14:65208600-65222400	Weak transcription	Stomach Mucosa	stomach
9	chr14:65209800-65223600	Weak transcription	Psoas Muscle	Psoas
10	chr14:65211200-65217400	Strong transcription	Fetal Intestine Large	intestine
11	chr14:65211200-65219000	Weak transcription	Small Intestine	intestine
12	chr14:65211200-65228800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr14:65212000-65224400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr14:65212400-65217400	Strong transcription	Sigmoid Colon	Sigmoid Colon
15	chr14:65212600-65217000	Strong transcription	A549	lung
16	chr14:65212800-65218800	Weak transcription	Brain Germinal Matrix	brain
17	chr14:65212800-65224200	Weak transcription	Aorta	Aorta
18	chr14:65213000-65217000	Strong transcription	Placenta Amnion	Placenta Amnion
19	chr14:65213200-65217400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr14:65213400-65217600	Strong transcription	Fetal Stomach	stomach
21	chr14:65213400-65218200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr14:65213600-65217000	Strong transcription	Placenta	Placenta
23	chr14:65213600-65218200	Weak transcription	Lung	lung
24	chr14:65213600-65219600	Strong transcription	HMEC	breast
25	chr14:65213800-65217000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr14:65213800-65217200	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr14:65213800-65219000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr14:65213800-65222200	Weak transcription	Colon Smooth Muscle	Colon
29	chr14:65214000-65217400	Strong transcription	Fetal Muscle Leg	muscle
30	chr14:65214000-65220200	Weak transcription	Adipose Nuclei	Adipose
31	chr14:65214000-65221600	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr14:65214000-65223600	Weak transcription	Right Atrium	heart
33	chr14:65214200-65217400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr14:65214200-65221200	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr14:65214200-65224800	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr14:65214400-65217000	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr14:65214400-65218600	Weak transcription	Primary monocytes fromperipheralblood	blood
38	chr14:65214400-65218800	Weak transcription	Duodenum Mucosa	Duodenum
39	chr14:65214400-65224200	Weak transcription	Fetal Lung	lung
40	chr14:65214400-65224400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr14:65214400-65224600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr14:65214400-65224600	Weak transcription	Fetal Kidney	kidney
43	chr14:65214600-65218800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr14:65214600-65224600	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr14:65214800-65219000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr14:65214800-65222000	Strong transcription	Fetal Muscle Trunk	muscle
47	chr14:65214800-65224600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr14:65215000-65217600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr14:65215000-65219200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr14:65215000-65221200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links