Variant report

Variant	rs1997497
Chromosome Location	chr4:92365182-92365183
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10009559	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10022644	0.88[CEU][hapmap];0.86[TSI][hapmap]
rs10856887	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12331080	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12498654	0.88[CEU][hapmap];1.00[GIH][hapmap]
rs12501170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12501231	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12640730	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12649871	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap]
rs13123986	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs13138113	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13150878	0.93[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap]
rs1922216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1922217	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1922226	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap]
rs1922227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1922228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1922229	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1922230	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1922233	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs1922236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1997496	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2204873	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap]
rs28685630	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6532311	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6821132	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6824640	0.82[CHD][hapmap];0.89[JPT][hapmap]
rs6838823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7440542	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs7656939	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869023	chr4:91940838-92935383	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	esv3384271	chr4:92073391-92464275	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv879567	chr4:92215966-92413671	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1830673	chr4:92241587-92379081	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv879568	chr4:92244300-92429961	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv879570	chr4:92281419-92368346	ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv879571	chr4:92281419-92483806	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv879572	chr4:92281419-92510827	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv879573	chr4:92281419-92520419	Weak transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv518645	chr4:92286605-92422256	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv879574	chr4:92304224-92429961	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv427687	chr4:92312672-92466407	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv879575	chr4:92322333-92520419	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv879576	chr4:92356118-92651110	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv3417177	chr4:92360440-92385422	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv966529	chr4:92364990-92374587	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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