Variant report

Variant	rs199758167
Chromosome Location	chr18:10096-10097
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:129)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:129 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPD	chr18:9958-10726	K562	blood:	n/a	n/a
2	POU2F2	chr18:9943-10608	GM12878	blood:	n/a	n/a
3	REST	chr18:9929-10630	GM12878	blood:	n/a	n/a
4	POLR2A	chr18:9919-10796	PANC-1	pancreas:	n/a	n/a
5	SP1	chr18:9907-10704	A549	lung:	n/a	n/a
6	GABPA	chr18:10078-10200	Hela-S3	cervix:	n/a	n/a
7	CTCF	chr18:9954-10660	K562	blood:	n/a	n/a
8	PAX5	chr18:10066-10321	GM12878	blood:	n/a	n/a
9	SIN3AK20	chr18:10078-10393	HepG2	liver:	n/a	n/a
10	PAX5	chr18:9989-10702	GM12878	blood:	n/a	n/a
11	FOXA2	chr18:9945-10851	A549	lung:	n/a	n/a
12	ZBTB33	chr18:9930-10725	K562	blood:	n/a	n/a
13	ZBTB33	chr18:9944-10472	HepG2	liver:	n/a	n/a
14	TCF12	chr18:9949-10689	HepG2	liver:	n/a	n/a
15	EBF1	chr18:10023-10360	GM12878	blood:	n/a	n/a
16	SPI1	chr18:10086-10231	GM12878	blood:	n/a	n/a
17	YY1	chr18:9962-10690	A549	lung:	n/a	n/a
18	POLR2A	chr18:9914-10848	GM12891	blood:	n/a	n/a
19	ZBTB33	chr18:9955-10203	HepG2	liver:	n/a	n/a
20	POLR2A	chr18:9968-10373	HepG2	liver:	n/a	n/a
21	BATF	chr18:9958-10337	GM12878	blood:	n/a	n/a
22	FOXP2	chr18:9951-10264	SK-N-MC	brain:	n/a	n/a
23	IRF4	chr18:10009-10748	GM12878	blood:	n/a	n/a
24	NFIC	chr18:9912-10784	GM12878	blood:	n/a	n/a
25	HEY1	chr18:10037-10405	K562	blood:	n/a	n/a
26	ZBTB33	chr18:9995-10373	SK-N-SH	brain:	n/a	n/a
27	ZBTB33	chr18:9913-10817	K562	blood:	n/a	n/a
28	CTCF	chr18:10020-10170	SAEC	small airway:	n/a	n/a
29	SPI1	chr18:10005-10398	GM12878	blood:	n/a	n/a
30	POU2F2	chr18:9934-10750	GM12891	blood:	n/a	n/a
31	CBX3	chr18:9952-10758	K562	blood:	n/a	n/a
32	REST	chr18:9939-10660	H1-hESC	embryonic stem cell:	n/a	n/a
33	POLR2A	chr18:9924-10735	H1-hESC	embryonic stem cell:	n/a	n/a
34	USF1	chr18:10072-10396	HepG2	liver:	n/a	n/a
35	CTCF	chr18:10018-10353	K562	blood:	n/a	n/a
36	SIX5	chr18:10044-10688	K562	blood:	n/a	n/a
37	FOSL2	chr18:9930-10672	HepG2	liver:	n/a	n/a
38	RUNX3	chr18:9989-10217	GM12878	blood:	n/a	n/a
39	MAFF	chr18:10000-10210	K562	blood:	n/a	n/a
40	ZBTB33	chr18:9917-10758	HepG2	liver:	n/a	n/a
41	POLR2A	chr18:9935-10723	U87	brain:	n/a	n/a
42	TCF3	chr18:9971-10681	GM12878	blood:	n/a	n/a
43	USF1	chr18:10026-10636	HepG2	liver:	n/a	n/a
44	NR2F2	chr18:9938-10739	K562	blood:	n/a	n/a
45	TAF1	chr18:9943-10715	GM12878	blood:	n/a	n/a
46	IRF4	chr18:9912-10693	GM12878	blood:	n/a	n/a
47	EP300	chr18:10023-10453	GM12878	blood:	n/a	n/a
48	POLR2A	chr18:9935-10665	H1-hESC	embryonic stem cell:	n/a	n/a
49	SP1	chr18:9921-10678	HepG2	liver:	n/a	n/a
50	SP1	chr18:9913-10562	K562	blood:	n/a	n/a

No data

Variant related genes	Relation type
ENSG00000262352	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv978590	chr18:10001-16279	ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv9599	chr18:10001-68441	Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv909285	chr18:10001-196829	Strong transcription ZNF genes & repeats Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8800-11200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr18:10000-10200	ZNF genes & repeats	Brain Germinal Matrix	brain
3	chr18:10000-10400	ZNF genes & repeats	Placenta Amnion	Placenta Amnion
4	chr18:10000-10600	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
5	chr18:10000-10600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr18:10000-10600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
7	chr18:10000-10600	Active TSS	Fetal Heart	heart
8	chr18:10000-11000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr18:10000-13600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin

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