Variant report

Variant	rs199769501
Chromosome Location	chr7:100890578-100890579
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:100859400..100864017-chr7:100886115..100890578,15	K562	blood:
2	chr7:100888737..100891690-chr7:100902094..100903966,2	MCF-7	breast:
3	chr7:100859374..100863045-chr7:100885733..100890781,8	K562	blood:
4	chr7:100888574..100891028-chr7:100920575..100922314,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106400	Chromatin interaction
ENSG00000106397	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831075	chr7:100692297-100917018	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv933653	chr7:100701931-101515782	Active TSS ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1030604	chr7:100717732-101223465	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	esv2422376	chr7:100743485-101016471	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
5	nsv534186	chr7:100773842-100898909	Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv464651	chr7:100792810-100971604	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
7	nsv607974	chr7:100792810-100971604	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
8	nsv429788	chr7:100799565-101178565	Weak transcription Strong transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
9	esv2752134	chr7:100800131-101141867	Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
10	nsv831076	chr7:100828847-101011674	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
11	nsv888818	chr7:100833153-100895480	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
12	nsv888819	chr7:100833153-100920007	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
13	esv2422326	chr7:100833449-101000131	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
14	nsv607978	chr7:100861213-100971604	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
15	nsv831077	chr7:100874209-101083930	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
16	nsv970916	chr7:100890266-100893923	Weak transcription Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:100888600-100893800	Weak transcription	Gastric	stomach
2	chr7:100888800-100890800	Weak transcription	Primary T cells from cord blood	blood
3	chr7:100888800-100892200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr7:100888800-100893600	Weak transcription	HUVEC	blood vessel
5	chr7:100888800-100894600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:100888800-100894600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr7:100888800-100894600	Weak transcription	Aorta	Aorta
8	chr7:100888800-100894600	Weak transcription	Esophagus	oesophagus
9	chr7:100888800-100894600	Weak transcription	Fetal Kidney	kidney
10	chr7:100889000-100890800	Weak transcription	Duodenum Mucosa	Duodenum
11	chr7:100889000-100892000	Weak transcription	Primary B cells from cord blood	blood
12	chr7:100889000-100892600	Weak transcription	Lung	lung
13	chr7:100889000-100893600	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr7:100889000-100893800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:100889000-100893800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr7:100889000-100893800	Weak transcription	Colonic Mucosa	Colon
17	chr7:100889000-100893800	Weak transcription	Right Atrium	heart
18	chr7:100889000-100894200	Weak transcription	Osteobl	bone
19	chr7:100889000-100894400	Weak transcription	HSMM	muscle
20	chr7:100889000-100894600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr7:100889000-100894600	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr7:100889000-100894600	Weak transcription	HSMMtube	muscle
23	chr7:100889000-100894600	Weak transcription	NH-A	brain
24	chr7:100889200-100890800	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr7:100889200-100890800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr7:100889200-100890800	Weak transcription	Fetal Muscle Leg	muscle
27	chr7:100889200-100890800	Weak transcription	Left Ventricle	heart
28	chr7:100889200-100890800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr7:100889200-100891800	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr7:100889200-100891800	Strong transcription	GM12878-XiMat	blood
31	chr7:100889200-100892400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr7:100889200-100892800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr7:100889200-100893600	Weak transcription	Primary hematopoietic stem cells	blood
34	chr7:100889200-100893600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
35	chr7:100889200-100893600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr7:100889200-100893600	Weak transcription	Brain Hippocampus Middle	brain
37	chr7:100889200-100893600	Strong transcription	Fetal Stomach	stomach
38	chr7:100889200-100893600	Weak transcription	NHDF-Ad	bronchial
39	chr7:100889200-100893800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr7:100889200-100893800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr7:100889200-100893800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
42	chr7:100889200-100893800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr7:100889200-100893800	Weak transcription	Fetal Heart	heart
44	chr7:100889200-100893800	Weak transcription	Ovary	ovary
45	chr7:100889200-100893800	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr7:100889200-100893800	Weak transcription	NHLF	lung
47	chr7:100889200-100894400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr7:100889200-100894600	Weak transcription	H9 Cell Line	embryonic stem cell
49	chr7:100889400-100890600	Weak transcription	Brain Anterior Caudate	brain
50	chr7:100889400-100890600	Weak transcription	Fetal Lung	lung

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