Variant report

Variant	rs199809769
Chromosome Location	chr5:96278939-96278940
allele	-/AAAG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:96142551..96144780-chr5:96277248..96279292,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164307	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv948703	chr5:96078309-96368839	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1027472	chr5:96081592-96337550	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1028741	chr5:96082401-96372165	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv949058	chr5:96082433-96390619	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv598963	chr5:96084776-96363407	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv531967	chr5:96127842-96302702	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	nsv980700	chr5:96277931-96279547	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96272600-96281400	Weak transcription	Spleen	Spleen
2	chr5:96272800-96279000	Weak transcription	Esophagus	oesophagus
3	chr5:96273000-96279000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr5:96273000-96285000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:96273000-96288000	Weak transcription	Fetal Stomach	stomach
6	chr5:96273000-96299200	Weak transcription	Aorta	Aorta
7	chr5:96273200-96279600	Weak transcription	Fetal Muscle Leg	muscle
8	chr5:96273400-96281000	Weak transcription	Fetal Lung	lung
9	chr5:96273400-96292800	Weak transcription	K562	blood
10	chr5:96273600-96280200	Weak transcription	HUVEC	blood vessel
11	chr5:96273800-96283000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr5:96273800-96285000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr5:96273800-96287200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr5:96273800-96289600	Weak transcription	Fetal Kidney	kidney
15	chr5:96273800-96291200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:96274200-96280000	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr5:96274400-96279000	Weak transcription	NHLF	lung
18	chr5:96274400-96279800	Weak transcription	Hela-S3	cervix
19	chr5:96274400-96282000	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr5:96274400-96282000	Weak transcription	A549	lung
21	chr5:96274400-96288200	Weak transcription	Brain Cingulate Gyrus	brain
22	chr5:96274600-96279600	Weak transcription	Right Atrium	heart
23	chr5:96274600-96279600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr5:96274600-96281000	Weak transcription	Small Intestine	intestine
25	chr5:96274600-96281200	Weak transcription	Brain Anterior Caudate	brain
26	chr5:96274600-96281200	Weak transcription	Brain Hippocampus Middle	brain
27	chr5:96274600-96286000	Weak transcription	Adipose Nuclei	Adipose
28	chr5:96274600-96287400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr5:96274600-96288000	Weak transcription	Colon Smooth Muscle	Colon
30	chr5:96274600-96288800	Weak transcription	Duodenum Mucosa	Duodenum
31	chr5:96274600-96293000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr5:96274600-96298400	Weak transcription	HSMM	muscle
33	chr5:96274800-96288400	Weak transcription	HepG2	liver
34	chr5:96275200-96279600	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr5:96275800-96284400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr5:96275800-96284800	Weak transcription	Primary B cells from cord blood	blood
37	chr5:96276000-96288000	Weak transcription	Fetal Heart	heart
38	chr5:96276400-96279800	Genic enhancers	Primary B cells from peripheral blood	blood
39	chr5:96276400-96279800	Genic enhancers	Primary T cells fromperipheralblood	blood
40	chr5:96276600-96279000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr5:96276600-96279200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr5:96276600-96279200	Weak transcription	HMEC	breast
43	chr5:96276600-96288000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr5:96276800-96282000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr5:96277000-96279600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr5:96277000-96288400	Weak transcription	Psoas Muscle	Psoas
47	chr5:96277200-96279000	Weak transcription	Left Ventricle	heart
48	chr5:96277600-96280000	Enhancers	NHDF-Ad	bronchial
49	chr5:96277800-96279000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr5:96277800-96279200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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