Variant report

Variant	rs199814276
Chromosome Location	chr8:121458642-121458643
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:121458512-121458661	MCF10A-Er-Src	breast:	n/a	n/a
2	HCFC1	chr8:121456654-121458709	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:121451054..121453168-chr8:121457842..121461614,3	K562	blood:

Variant related genes	Relation type
MRPL13	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891420	chr8:121194900-121561369	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv891421	chr8:121292407-121653902	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1033386	chr8:121369943-121501239	Flanking Active TSS Strong transcription Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv470235	chr8:121437222-121526747	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv519152	chr8:121458457-121571266	Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:121455800-121458800	Active TSS	HUES48 Cell Line	embryonic stem cell
2	chr8:121456000-121458800	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr8:121456200-121459000	Active TSS	K562	blood
4	chr8:121456200-121459600	Active TSS	HUES64 Cell Line	embryonic stem cell
5	chr8:121456400-121458800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr8:121457800-121459000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:121457800-121459000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr8:121457800-121459000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:121457800-121459000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr8:121458000-121458800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:121458000-121458800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:121458000-121458800	Flanking Active TSS	NHLF	lung
13	chr8:121458000-121465800	Weak transcription	Spleen	Spleen
14	chr8:121458000-121467200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:121458000-121468000	Weak transcription	Esophagus	oesophagus
16	chr8:121458000-121468200	Weak transcription	Gastric	stomach
17	chr8:121458000-121478400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:121458000-121480800	Weak transcription	Lung	lung
19	chr8:121458000-121480800	Weak transcription	Pancreas	Pancrea
20	chr8:121458000-121510400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr8:121458200-121458800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr8:121458200-121458800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr8:121458200-121458800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr8:121458200-121458800	Enhancers	Liver	Liver
25	chr8:121458200-121458800	Enhancers	Brain Angular Gyrus	brain
26	chr8:121458200-121458800	Flanking Active TSS	NHDF-Ad	bronchial
27	chr8:121458200-121459000	Flanking Active TSS	NHEK	skin
28	chr8:121458200-121466000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr8:121458200-121479600	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr8:121458200-121480600	Weak transcription	Left Ventricle	heart
31	chr8:121458200-121483000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr8:121458200-121505200	Weak transcription	Placenta	Placenta
33	chr8:121458400-121458800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
34	chr8:121458400-121458800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr8:121458400-121458800	Active TSS	Fetal Brain Male	brain
36	chr8:121458400-121458800	Enhancers	Fetal Heart	heart
37	chr8:121458400-121458800	Flanking Active TSS	Hela-S3	cervix
38	chr8:121458400-121458800	Flanking Active TSS	HMEC	breast
39	chr8:121458400-121458800	Enhancers	Osteobl	bone
40	chr8:121458400-121459000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr8:121458400-121459000	Flanking Active TSS	Dnd41	blood
42	chr8:121458400-121459000	Flanking Active TSS	HepG2	liver
43	chr8:121458400-121459600	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr8:121458400-121463800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr8:121458400-121463800	Weak transcription	Fetal Intestine Small	intestine
46	chr8:121458400-121464000	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr8:121458400-121470600	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr8:121458400-121471000	Weak transcription	Primary monocytes fromperipheralblood	blood
49	chr8:121458400-121474200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr8:121458400-121474400	Weak transcription	Fetal Muscle Trunk	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links