Variant report

Variant	rs199820669
Chromosome Location	chr2:142351004-142351005
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583203	chr2:142055133-142378975	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv834393	chr2:142256714-142431564	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
3	nsv583214	chr2:142299923-142458316	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv1011019	chr2:142314999-142430460	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv583233	chr2:142336104-142359850	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv875244	chr2:142336104-142421500	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv875245	chr2:142336104-142421500	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv2425365	chr2:142350414-142352112	Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv9456	chr2:142350738-142351585	ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv1935046	chr2:142350805-142351512	ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv3458450	chr2:142350869-142351412	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
12	esv3499169	chr2:142350882-142351405	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
13	esv3499167	chr2:142350895-142351405	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
14	esv3499171	chr2:142350915-142351369	Weak transcription	n/a	n/a	inside rSNPs	n/a
15	esv3499168	chr2:142350917-142351360	Weak transcription	n/a	n/a	inside rSNPs	n/a
16	esv3458448	chr2:142350924-142351396	Weak transcription	n/a	n/a	inside rSNPs	n/a
17	esv3458449	chr2:142350926-142351401	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
18	esv3458446	chr2:142350937-142351349	Weak transcription	n/a	n/a	inside rSNPs	n/a
19	esv3428014	chr2:142350942-142351375	Weak transcription	n/a	n/a	inside rSNPs	n/a
20	esv3499172	chr2:142350949-142351369	Weak transcription	n/a	n/a	inside rSNPs	n/a
21	esv3645	chr2:142350958-142351471	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	n/a
22	esv3397355	chr2:142350962-142351345	Weak transcription	n/a	n/a	inside rSNPs	n/a
23	esv3458447	chr2:142350982-142351333	Weak transcription	n/a	n/a	inside rSNPs	n/a
24	esv3499170	chr2:142350997-142351323	Weak transcription	n/a	n/a	inside rSNPs	n/a
25	esv3458451	chr2:142350999-142351329	Weak transcription	n/a	n/a	inside rSNPs	n/a
26	esv3499173	chr2:142350999-142351329	Weak transcription	n/a	n/a	inside rSNPs	n/a
27	esv995362	chr2:142351000-142351324	Weak transcription	n/a	n/a	inside rSNPs	n/a
28	esv1788294	chr2:142351003-142351328	Weak transcription	n/a	n/a	inside rSNPs	n/a
29	nsv214324	chr2:142351004-142351328	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142351000-142351400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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