Variant report

Variant	rs1998266
Chromosome Location	chr6:36358289-36358290
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1885205	0.84[EUR][1000 genomes]
rs2234067	0.86[EUR][1000 genomes]
rs4486005	0.93[CEU][hapmap]
rs4713969	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs4713971	0.87[AMR][1000 genomes]
rs6900093	0.83[CHB][hapmap];0.85[AMR][1000 genomes]
rs6906529	0.85[AMR][1000 genomes]
rs7764323	0.93[CEU][hapmap]
rs879036	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs881648	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs916287	0.84[EUR][1000 genomes]
rs9368927	0.85[AMR][1000 genomes]
rs9470268	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428481	chr6:36219000-36365746	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv885806	chr6:36349890-36621178	Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	103 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36356200-36365400	Weak transcription	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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