Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:196232005..196234136-chr1:196236276..196237836,2	K562	blood:
2	chr1:196235461..196237325-chr1:196240732..196242654,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11801881	0.92[GIH][hapmap]
rs12058062	0.92[GIH][hapmap]
rs12060609	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12067586	0.80[ASN][1000 genomes]
rs12071084	1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[ASN][1000 genomes]
rs12082579	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs12092252	0.90[ASN][1000 genomes]
rs1325299	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1924755	0.92[GIH][hapmap]
rs1924757	0.92[GIH][hapmap]
rs1925337	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2477354	0.92[GIH][hapmap]
rs2477556	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4379659	0.92[GIH][hapmap]
rs558895	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs59729886	0.90[ASN][1000 genomes]
rs606473	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs912760	0.92[GIH][hapmap]
rs994454	1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[ASN][1000 genomes]
rs9970935	0.92[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872948	chr1:195872295-196236425	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv872952	chr1:196174790-196304223	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv548741	chr1:196186750-196293493	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv832237	chr1:196205674-196328500	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196214000-196241400	Weak transcription	Liver	Liver
2	chr1:196214600-196247800	Weak transcription	Ovary	ovary
3	chr1:196234800-196236800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:196234800-196248600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr1:196234800-196252200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr1:196234800-196255400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr1:196235600-196236600	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr1:196235600-196237000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr1:196235800-196237200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr1:196236000-196236800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:196236000-196237000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr1:196236400-196237000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr1:196236400-196248600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

Quick Search: