Variant report

Variant	rs199883345
Chromosome Location	chr9:117848670-117848671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117841964..117843849-chr9:117846217..117848854,2	MCF-7	breast:
2	chr9:117843493..117846362-chr9:117847187..117851097,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831696	chr9:117701582-117874150	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3481731	chr9:117847681-117850479	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv3481732	chr9:117847681-117850479	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3330954	chr9:117848335-117848809	Genic enhancers Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117815400-117859200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:117817800-117850600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:117822400-117854400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr9:117826800-117849400	Strong transcription	Osteobl	bone
5	chr9:117827000-117849200	Strong transcription	NHDF-Ad	bronchial
6	chr9:117827200-117855200	Strong transcription	NH-A	brain
7	chr9:117827400-117849200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:117834000-117849400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:117834000-117849800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr9:117837000-117849400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr9:117839000-117848800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:117839000-117849200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr9:117839600-117849200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:117841200-117860600	Weak transcription	Fetal Kidney	kidney
15	chr9:117841400-117849200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr9:117842600-117850400	Weak transcription	Fetal Brain Female	brain
17	chr9:117842800-117849400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr9:117842800-117855200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:117843600-117849000	Strong transcription	Fetal Muscle Leg	muscle
20	chr9:117843600-117849400	Strong transcription	NHLF	lung
21	chr9:117845600-117849000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr9:117845600-117850000	Weak transcription	Gastric	stomach
23	chr9:117845800-117849600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr9:117845800-117850400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr9:117846200-117849600	Strong transcription	Fetal Stomach	stomach
26	chr9:117846200-117849800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:117846200-117849800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr9:117846400-117848800	Strong transcription	Aorta	Aorta
29	chr9:117846600-117849600	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr9:117846600-117849600	Genic enhancers	NHEK	skin
31	chr9:117846600-117851000	Weak transcription	Right Atrium	heart
32	chr9:117846800-117849600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr9:117847000-117849000	Weak transcription	Fetal Muscle Trunk	muscle
34	chr9:117847200-117856000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr9:117847400-117849200	Weak transcription	HMEC	breast
36	chr9:117847800-117849600	Genic enhancers	Rectal Smooth Muscle	rectum
37	chr9:117848000-117849200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr9:117848000-117849200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr9:117848000-117849400	Strong transcription	Fetal Intestine Large	intestine
40	chr9:117848000-117849600	Strong transcription	Fetal Intestine Small	intestine
41	chr9:117848200-117848800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr9:117848200-117848800	Strong transcription	Lung	lung
43	chr9:117848200-117849600	Strong transcription	HUES6 Cell Line	embryonic stem cell
44	chr9:117848200-117849600	Strong transcription	Spleen	Spleen
45	chr9:117848400-117849000	Weak transcription	Esophagus	oesophagus
46	chr9:117848400-117849200	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr9:117848400-117849600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr9:117848600-117848800	Genic enhancers	Cortex derived primary cultured neurospheres	brain
49	chr9:117848600-117849000	Enhancers	Brain Substantia Nigra	brain
50	chr9:117848600-117849400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links