Variant report

Variant	rs199902453
Chromosome Location	chr6:4032069-4032070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532020	chr6:3417520-4140257	Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1022968	chr6:3862744-4272502	Enhancers Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv538106	chr6:3862744-4272502	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	nsv1034223	chr6:4030708-4060347	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4022400-4043400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:4022600-4049400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:4023000-4038600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:4023000-4063600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:4023200-4034000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr6:4023200-4035600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:4023200-4043400	Weak transcription	Aorta	Aorta
8	chr6:4023200-4064000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:4023400-4038800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:4023400-4040600	Weak transcription	Fetal Brain Male	brain
11	chr6:4023400-4071600	Weak transcription	Stomach Mucosa	stomach
12	chr6:4023800-4032200	Weak transcription	Colonic Mucosa	Colon
13	chr6:4023800-4033600	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr6:4023800-4037400	Weak transcription	Fetal Brain Female	brain
15	chr6:4023800-4037600	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:4023800-4067000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:4024000-4035600	Weak transcription	NHLF	lung
18	chr6:4024000-4036400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr6:4024000-4037600	Weak transcription	HSMMtube	muscle
20	chr6:4024200-4037000	Weak transcription	Right Atrium	heart
21	chr6:4024200-4040200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr6:4024400-4035800	Weak transcription	Thymus	Thymus
23	chr6:4024600-4036600	Weak transcription	Spleen	Spleen
24	chr6:4024600-4040200	Weak transcription	Esophagus	oesophagus
25	chr6:4024600-4059200	Strong transcription	Fetal Thymus	thymus
26	chr6:4025200-4039200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr6:4025400-4037600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr6:4025800-4034000	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr6:4026000-4032800	Weak transcription	Brain Anterior Caudate	brain
30	chr6:4027000-4032200	Weak transcription	Colon Smooth Muscle	Colon
31	chr6:4027000-4033400	Genic enhancers	Primary T cells from cord blood	blood
32	chr6:4027000-4034200	Genic enhancers	Dnd41	blood
33	chr6:4027200-4038200	Genic enhancers	Primary T helper cells PMA-I stimulated	--
34	chr6:4027200-4058200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr6:4027400-4032600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr6:4027400-4037600	Weak transcription	Left Ventricle	heart
37	chr6:4027400-4039600	Weak transcription	Fetal Heart	heart
38	chr6:4027400-4039600	Weak transcription	Gastric	stomach
39	chr6:4027800-4040800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr6:4027800-4041600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:4028200-4035000	Strong transcription	NHEK	skin
42	chr6:4028200-4038800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr6:4028600-4039000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:4028800-4035800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:4028800-4035800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr6:4028800-4035800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr6:4028800-4036400	Weak transcription	Lung	lung
48	chr6:4028800-4037000	Weak transcription	Brain Cingulate Gyrus	brain
49	chr6:4028800-4038600	Weak transcription	Ovary	ovary
50	chr6:4028800-4038600	Weak transcription	Psoas Muscle	Psoas

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