Variant report

Variant	rs199915134
Chromosome Location	chr10:97599532-97599533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:97599305-97599971	GM12878	blood:	n/a	n/a
2	POLR2A	chr10:97598921-97599637	GM12891	blood:	n/a	n/a
3	POLR2A	chr10:97596339-97599695	GM12891	blood:	n/a	n/a
4	POLR2A	chr10:97598894-97600176	GM12878	blood:	n/a	n/a
5	POLR2A	chr10:97599127-97599775	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENTPD1	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531923	chr10:97366055-97725757	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv895905	chr10:97513362-97686064	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv895906	chr10:97513362-97703650	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv895907	chr10:97529318-97686064	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv895908	chr10:97544513-97724247	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv825528	chr10:97599497-97600733	Enhancers Strong transcription Weak transcription Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97578600-97604400	Weak transcription	Aorta	Aorta
2	chr10:97581000-97600600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr10:97581200-97602000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:97586200-97600000	Weak transcription	Fetal Intestine Small	intestine
5	chr10:97591600-97601000	Weak transcription	Spleen	Spleen
6	chr10:97592000-97602200	Enhancers	Primary B cells from cord blood	blood
7	chr10:97592000-97607200	Weak transcription	Left Ventricle	heart
8	chr10:97592600-97632800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr10:97592800-97600400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr10:97593000-97601400	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr10:97594200-97601200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr10:97594200-97601400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:97594200-97602200	Enhancers	Primary B cells from peripheral blood	blood
14	chr10:97594400-97600400	Weak transcription	Fetal Intestine Large	intestine
15	chr10:97597200-97601200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr10:97597200-97601600	Weak transcription	Brain Cingulate Gyrus	brain
17	chr10:97597200-97627200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr10:97597400-97599600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr10:97597400-97600600	Weak transcription	Small Intestine	intestine
20	chr10:97597400-97601200	Weak transcription	Brain Hippocampus Middle	brain
21	chr10:97597400-97601200	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:97597400-97601400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr10:97597400-97601400	Weak transcription	Brain Substantia Nigra	brain
24	chr10:97597400-97602600	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr10:97597400-97604600	Weak transcription	Lung	lung
26	chr10:97597400-97624600	Weak transcription	Placenta	Placenta
27	chr10:97597400-97627400	Weak transcription	Brain Angular Gyrus	brain
28	chr10:97597600-97600800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:97597600-97601200	Weak transcription	Brain Anterior Caudate	brain
30	chr10:97597600-97601400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr10:97597600-97609600	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr10:97597600-97620600	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr10:97597800-97600000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr10:97597800-97601400	Weak transcription	Fetal Stomach	stomach
35	chr10:97597800-97601400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr10:97598000-97600200	Weak transcription	HepG2	liver
37	chr10:97598000-97600400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr10:97598200-97601400	Weak transcription	Colon Smooth Muscle	Colon
39	chr10:97598200-97602600	Weak transcription	Stomach Smooth Muscle	stomach
40	chr10:97598400-97601400	Genic enhancers	Monocytes-CD14+_RO01746	blood
41	chr10:97598600-97601200	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr10:97598800-97600000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr10:97599000-97600200	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr10:97599000-97601000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr10:97599000-97601200	Genic enhancers	GM12878-XiMat	blood
46	chr10:97599400-97600000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr10:97599400-97601000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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