Variant report

Variant	rs199921835
Chromosome Location	chr9:104129785-104129786
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037157	chr9:104045761-104149233	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	esv3431849	chr9:104129584-104132561	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	esv2337423	chr9:104129785-104129786	Weak transcription Enhancers Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104117600-104138800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:104117800-104160000	Weak transcription	Pancreas	Pancrea
3	chr9:104128000-104130600	Enhancers	Fetal Intestine Large	intestine
4	chr9:104128600-104131600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr9:104128600-104135600	Genic enhancers	Liver	Liver
6	chr9:104128800-104133600	Enhancers	K562	blood
7	chr9:104129000-104130200	Weak transcription	Stomach Mucosa	stomach
8	chr9:104129000-104131200	Weak transcription	NH-A	brain
9	chr9:104129000-104132000	Enhancers	HepG2	liver
10	chr9:104129000-104132600	Enhancers	A549	lung
11	chr9:104129000-104138200	Weak transcription	HSMMtube	muscle
12	chr9:104129200-104131200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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