Variant report

Variant	rs199936655
Chromosome Location	chr3:150987851-150987852
allele	-/GATGAA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AADACL2-6	chr3:150987228-150987917	NONHSAT092721

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	esv2754555	chr3:150968302-151054302	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv979890	chr3:150986756-150990249	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150977800-151000000	Weak transcription	Placenta	Placenta
2	chr3:150981800-150994000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:150983000-151011000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:150983800-150989400	Enhancers	Primary B cells from cord blood	blood
5	chr3:150983800-151000600	Weak transcription	Brain Substantia Nigra	brain
6	chr3:150984000-150996000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr3:150984200-150998800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:150984400-151022400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:150984600-150988200	Weak transcription	Fetal Stomach	stomach
10	chr3:150984600-151003600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:150984600-151003600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr3:150984800-150988200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr3:150984800-150989000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr3:150984800-150993800	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr3:150985400-150988200	Weak transcription	Fetal Lung	lung
16	chr3:150986000-150989800	Enhancers	Primary B cells from peripheral blood	blood
17	chr3:150986800-150988200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:150986800-150991400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr3:150986800-150992200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr3:150986800-150992800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr3:150986800-150994000	Weak transcription	Duodenum Mucosa	Duodenum
22	chr3:150987000-150991800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr3:150987000-150992000	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr3:150987000-150992000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr3:150987000-150992000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:150987000-150992200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr3:150987200-150988000	Enhancers	Fetal Heart	heart
28	chr3:150987200-150991800	Weak transcription	Fetal Thymus	thymus
29	chr3:150987400-150988400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:150987400-150988600	Enhancers	Colon Smooth Muscle	Colon
31	chr3:150987400-150988600	Enhancers	Rectal Smooth Muscle	rectum
32	chr3:150987400-150992600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr3:150987600-150988000	Enhancers	Stomach Smooth Muscle	stomach
34	chr3:150987600-150988000	Bivalent Enhancer	NHDF-Ad	bronchial
35	chr3:150987600-150988400	Active TSS	Duodenum Smooth Muscle	Duodenum
36	chr3:150987800-150989000	Weak transcription	Brain Hippocampus Middle	brain
37	chr3:150987800-150990600	Weak transcription	GM12878-XiMat	blood
38	chr3:150987800-150991400	Weak transcription	Primary T cells from cord blood	blood
39	chr3:150987800-150992000	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr3:150987800-150993600	Weak transcription	Adipose Nuclei	Adipose

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