Variant report

Variant	rs199944955
Chromosome Location	chr3:17543600-17543601
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:30 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv869378	chr3:17338236-17576692	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv999568	chr3:17360261-17594750	Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv876592	chr3:17369313-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv2755442	chr3:17372796-17589896	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv876593	chr3:17419843-17604963	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv3715	chr3:17514325-17578178	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	esv1818359	chr3:17529948-17544013	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
14	nsv442855	chr3:17529948-17544013	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
15	esv3463734	chr3:17539448-17544246	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
16	esv3463735	chr3:17539448-17544246	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
17	esv3488204	chr3:17539698-17546896	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
18	esv3488202	chr3:17540148-17545946	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
19	esv3488201	chr3:17540491-17546365	Strong transcription Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
20	nsv963550	chr3:17540615-17546605	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
21	esv3488205	chr3:17540745-17545792	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
22	esv3488203	chr3:17540768-17545838	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
23	esv3488206	chr3:17540795-17545748	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
24	esv3488207	chr3:17540795-17545748	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
25	esv19332	chr3:17540863-17545653	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
26	nsv498992	chr3:17540876-17545681	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
27	nsv822026	chr3:17540996-17545817	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases
28	nsv514139	chr3:17541196-17545644	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
29	esv3463736	chr3:17541348-17547446	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
30	esv3463737	chr3:17541348-17547446	Weak transcription Enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17523000-17570000	Weak transcription	Spleen	Spleen
2	chr3:17523200-17556200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:17530600-17587600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:17532600-17543800	Weak transcription	Liver	Liver
5	chr3:17533200-17550600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:17533400-17549800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:17533600-17547200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:17534000-17546800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:17534000-17559800	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr3:17534200-17561600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:17535600-17552000	Weak transcription	Primary T cells from cord blood	blood
12	chr3:17536000-17549800	Weak transcription	Fetal Lung	lung
13	chr3:17536200-17555600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:17536400-17559800	Weak transcription	Adipose Nuclei	Adipose
15	chr3:17536400-17562600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr3:17536400-17568800	Weak transcription	GM12878-XiMat	blood
17	chr3:17536400-17574800	Weak transcription	Dnd41	blood
18	chr3:17536600-17544000	Weak transcription	Primary B cells from peripheral blood	blood
19	chr3:17536600-17544200	Weak transcription	Right Ventricle	heart
20	chr3:17536600-17547600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr3:17536600-17559600	Weak transcription	Fetal Stomach	stomach
22	chr3:17536600-17560400	Weak transcription	Fetal Intestine Large	intestine
23	chr3:17536600-17561600	Weak transcription	Fetal Muscle Trunk	muscle
24	chr3:17536600-17562200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr3:17536600-17588000	Weak transcription	Left Ventricle	heart
26	chr3:17536800-17547800	Weak transcription	Primary monocytes fromperipheralblood	blood
27	chr3:17537200-17560000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr3:17538600-17546800	Weak transcription	Aorta	Aorta
29	chr3:17538600-17551600	Weak transcription	Placenta	Placenta
30	chr3:17541800-17545200	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr3:17542600-17546800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr3:17542600-17546800	Weak transcription	HUVEC	blood vessel
33	chr3:17542600-17547200	Weak transcription	A549	lung
34	chr3:17542800-17546800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr3:17543000-17547400	Weak transcription	NHEK	skin
36	chr3:17543200-17543600	Enhancers	Fetal Heart	heart
37	chr3:17543200-17545800	Strong transcription	Primary B cells from cord blood	blood
38	chr3:17543400-17545600	Strong transcription	Primary hematopoietic stem cells	blood
39	chr3:17543600-17547600	Weak transcription	Fetal Heart	heart

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