Variant report

Variant	rs1999475
Chromosome Location	chr6:131241423-131241424
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs34206551	0.85[AFR][1000 genomes]
rs58646840	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6900130	1.00[ASW][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6901891	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131220600-131281200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr6:131222200-131248400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:131222200-131251800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:131222400-131248600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:131224400-131241600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:131228800-131245800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:131229400-131245200	Weak transcription	Adipose Nuclei	Adipose
8	chr6:131229600-131245400	Weak transcription	NHLF	lung
9	chr6:131229600-131248600	Weak transcription	Stomach Mucosa	stomach
10	chr6:131229600-131249600	Weak transcription	Osteobl	bone
11	chr6:131229800-131242400	Weak transcription	HepG2	liver
12	chr6:131234000-131250200	Weak transcription	Ovary	ovary
13	chr6:131234000-131250600	Weak transcription	Fetal Stomach	stomach
14	chr6:131234600-131244200	Weak transcription	Brain Substantia Nigra	brain
15	chr6:131234600-131244200	Weak transcription	Small Intestine	intestine
16	chr6:131234600-131244600	Weak transcription	Left Ventricle	heart
17	chr6:131234600-131248600	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr6:131234600-131249400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:131234600-131250200	Weak transcription	Pancreas	Pancrea
20	chr6:131234800-131244400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:131234800-131245000	Weak transcription	HSMM	muscle
22	chr6:131234800-131246800	Weak transcription	Primary B cells from peripheral blood	blood
23	chr6:131234800-131247200	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr6:131234800-131254000	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr6:131234800-131266600	Weak transcription	GM12878-XiMat	blood
26	chr6:131235800-131244200	Weak transcription	Fetal Muscle Leg	muscle
27	chr6:131236400-131254000	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr6:131238000-131244800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr6:131238400-131242200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:131238400-131248800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr6:131238400-131249800	Weak transcription	Colon Smooth Muscle	Colon
32	chr6:131238400-131250200	Weak transcription	Aorta	Aorta
33	chr6:131239200-131252600	Weak transcription	Dnd41	blood
34	chr6:131239800-131244200	Weak transcription	Fetal Lung	lung
35	chr6:131240000-131253600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr6:131241000-131242000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr6:131241200-131241800	Enhancers	A549	lung
38	chr6:131241400-131242000	Strong transcription	Fetal Muscle Trunk	muscle

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