The 2.0 version of rSNPBase

Variant report

Variant rs1999539
Chromosome Location chr1:56905640-56905641
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:56897200-56906000 Enhancers Brain Anterior Caudate brain
2 chr1:56897200-56906000 Enhancers Brain Cingulate Gyrus brain
3 chr1:56897200-56906000 Enhancers Brain Substantia Nigra brain
4 chr1:56898000-56906400 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
5 chr1:56899000-56906000 Enhancers Fetal Adrenal Gland Adrenal Gland
6 chr1:56900400-56906000 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
7 chr1:56900400-56906400 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr1:56900600-56912000 Weak transcription Esophagus oesophagus
9 chr1:56901800-56906000 Enhancers Brain Inferior Temporal Lobe brain
10 chr1:56902000-56912200 Weak transcription Lung lung
11 chr1:56902200-56911800 Weak transcription Stomach Smooth Muscle stomach
12 chr1:56902400-56906200 Enhancers Brain Hippocampus Middle brain
13 chr1:56902400-56907200 Weak transcription Primary neutrophils fromperipheralblood blood
14 chr1:56903000-56906400 Enhancers HepG2 liver
15 chr1:56903200-56906000 Enhancers Fetal Heart heart
16 chr1:56903200-56906400 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
17 chr1:56903200-56912000 Weak transcription Fetal Lung lung
18 chr1:56903600-56905800 Enhancers Skeletal Muscle Female skeletal muscle
19 chr1:56904000-56906000 Enhancers Psoas Muscle Psoas
20 chr1:56904200-56912200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr1:56904400-56905800 Enhancers Aorta Aorta
22 chr1:56904800-56906000 Enhancers Liver Liver
23 chr1:56904800-56906000 Enhancers Fetal Muscle Leg muscle
24 chr1:56905000-56905800 Enhancers Spleen Spleen
25 chr1:56905000-56906000 Enhancers Breast Myoepithelial Primary Cells Breast
26 chr1:56905000-56906000 Enhancers Adipose Nuclei Adipose
27 chr1:56905000-56906000 Enhancers Skeletal Muscle Male skeletal muscle
28 chr1:56905200-56906000 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
29 chr1:56905200-56906000 Enhancers Cortex derived primary cultured neurospheres brain
30 chr1:56905200-56906000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
31 chr1:56905200-56906000 Enhancers Brain Angular Gyrus brain
32 chr1:56905200-56906000 Enhancers Brain Dorsolateral Prefrontal Cortex brain
33 chr1:56905400-56905800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:56905400-56905800 Enhancers HMEC breast
35 chr1:56905400-56906000 Enhancers ES-I3 Cell Line embryonic stem cell
36 chr1:56905400-56906000 Enhancers HUES64 Cell Line embryonic stem cell
37 chr1:56905400-56906000 Enhancers iPS-18 Cell Line embryonic stem cell
38 chr1:56905400-56906000 Enhancers Primary B cells from peripheral blood blood
39 chr1:56905400-56906000 Enhancers HUVEC blood vessel
40 chr1:56905400-56942600 Weak transcription Gastric stomach
41 chr1:56905600-56906000 Enhancers Duodenum Smooth Muscle Duodenum
42 chr1:56905600-56906000 Enhancers Fetal Intestine Small intestine
43 chr1:56905600-56906200 Enhancers Primary B cells from cord blood blood
44 chr1:56905600-56908200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
45 chr1:56905600-56911000 Weak transcription Right Atrium heart
46 chr1:56905600-56912000 Weak transcription Left Ventricle heart
47 chr1:56905600-56914800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell

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Last update: Aug 31, 2015