Variant report

Variant rs199960839
Chromosome Location chr1:228594255-228594256
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:127 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:228592400-228594400 Flanking Active TSS Primary B cells from cord blood blood
2 chr1:228592600-228595200 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
3 chr1:228592600-228596000 Active TSS iPS-15b Cell Line embryonic stem cell
4 chr1:228592800-228595200 Active TSS A549 lung
5 chr1:228592800-228596400 Active TSS HSMM muscle
6 chr1:228593000-228594400 Flanking Active TSS Skeletal Muscle Female skeletal muscle
7 chr1:228593000-228595000 Active TSS HMEC breast
8 chr1:228593000-228595200 Active TSS HUES64 Cell Line embryonic stem cell
9 chr1:228593000-228596000 Active TSS NHDF-Ad bronchial
10 chr1:228593200-228595000 Active TSS H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr1:228593200-228595000 Active TSS Hela-S3 cervix
12 chr1:228593200-228595000 Active TSS HSMMtube muscle
13 chr1:228593200-228595000 Active TSS NHEK skin
14 chr1:228593200-228595400 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr1:228593200-228595400 Active TSS iPS-18 Cell Line embryonic stem cell
16 chr1:228593200-228595400 Active TSS Pancreatic Islets Pancreatic Islet
17 chr1:228593200-228595600 Active TSS ES-I3 Cell Line embryonic stem cell
18 chr1:228593200-228595600 Active TSS H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
19 chr1:228593200-228595600 Active TSS iPS DF 6.9 Cell Line embryonic stem cell
20 chr1:228593200-228595800 Active TSS H9 Cell Line embryonic stem cell
21 chr1:228593200-228595800 Active TSS HUES6 Cell Line embryonic stem cell
22 chr1:228593200-228595800 Active TSS iPS-20b Cell Line embryonic stem cell
23 chr1:228593200-228596000 Active TSS NHLF lung
24 chr1:228593400-228594400 Active TSS ES-WA7 Cell Line embryonic stem cell
25 chr1:228593400-228595000 Active TSS Primary T helper memory cells from peripheral blood 2 blood
26 chr1:228593400-228595000 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
27 chr1:228593400-228595000 Active TSS Sigmoid Colon Sigmoid Colon
28 chr1:228593400-228595000 Active TSS Small Intestine intestine
29 chr1:228593400-228595200 Active TSS H1 Cell Line embryonic stem cell
30 chr1:228593400-228595200 Active TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
31 chr1:228593400-228595200 Active TSS ES-UCSF4 Cell Line embryonic stem cell
32 chr1:228593400-228595200 Active TSS GM12878-XiMat blood
33 chr1:228593400-228595400 Active TSS H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
34 chr1:228593400-228595400 Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr1:228593400-228595600 Active TSS HUES48 Cell Line embryonic stem cell
36 chr1:228593400-228595600 Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
37 chr1:228593400-228595600 Active TSS Muscle Satellite Cultured Cells --
38 chr1:228593400-228595800 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
39 chr1:228593400-228596200 Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
40 chr1:228593600-228594400 Bivalent/Poised TSS Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr1:228593600-228594400 Active TSS Stomach Mucosa stomach
42 chr1:228593600-228594800 Active TSS Breast Myoepithelial Primary Cells Breast
43 chr1:228593600-228594800 Active TSS Primary hematopoietic stem cells short term culture blood
44 chr1:228593600-228594800 Active TSS Rectal Mucosa Donor 31 rectum
45 chr1:228593600-228595000 Active TSS H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
46 chr1:228593600-228595000 Active TSS H9 Derived Neuron Cultured Cells ES cell derived
47 chr1:228593600-228595000 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr1:228593600-228595000 Active TSS Primary T cells from cord blood blood
49 chr1:228593600-228595000 Active TSS Primary T helper naive cells from peripheral blood blood
50 chr1:228593600-228595000 Active TSS Primary T helper cells PMA-I stimulated --

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