Variant report

Variant	rs199962064
Chromosome Location	chr22:33106060-33106061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:32211896-32215168..22:33105668-33108370	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000236132	Chromatin interaction
ENSG00000100150	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064719	chr22:33028891-33159636	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv979672	chr22:33105500-33109433	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33103000-33113600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr22:33103400-33106200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr22:33104000-33106400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr22:33104200-33107200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr22:33104400-33117000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr22:33105000-33106200	Weak transcription	Right Atrium	heart
7	chr22:33105000-33108400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr22:33105000-33108400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr22:33105000-33108400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr22:33105200-33107600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr22:33105200-33107800	Weak transcription	Placenta	Placenta
12	chr22:33105200-33107800	Weak transcription	Spleen	Spleen
13	chr22:33105200-33108000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr22:33105200-33108000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr22:33105200-33108400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr22:33105200-33110000	Weak transcription	Fetal Lung	lung
17	chr22:33105200-33110800	Weak transcription	HSMMtube	muscle
18	chr22:33105200-33113400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr22:33105200-33113800	Weak transcription	NH-A	brain
20	chr22:33105400-33108600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr22:33105400-33108600	Weak transcription	Fetal Muscle Leg	muscle
22	chr22:33105400-33110000	Weak transcription	Fetal Stomach	stomach
23	chr22:33105600-33108400	Weak transcription	Adipose Nuclei	Adipose
24	chr22:33105800-33108600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr22:33105800-33108800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr22:33106000-33108000	Weak transcription	NHDF-Ad	bronchial
27	chr22:33106000-33108000	Weak transcription	Osteobl	bone

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