Variant report

Variant	rs199968665
Chromosome Location	chr14:64488611-64488612
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64483143..64485630-chr14:64487133..64489542,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv902020	chr14:64434288-64506541	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv1821411	chr14:64488037-64506541	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64395000-64491000	Weak transcription	Psoas Muscle	Psoas
2	chr14:64419200-64489000	Weak transcription	Small Intestine	intestine
3	chr14:64442400-64491000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr14:64457000-64502000	Strong transcription	Placenta	Placenta
5	chr14:64457000-64519200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr14:64458800-64490400	Weak transcription	Colonic Mucosa	Colon
7	chr14:64460000-64513400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:64460600-64495000	Weak transcription	NHDF-Ad	bronchial
9	chr14:64463200-64491000	Weak transcription	Fetal Brain Male	brain
10	chr14:64466400-64490600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr14:64466600-64490400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr14:64466600-64513200	Weak transcription	NHEK	skin
13	chr14:64466600-64593200	Weak transcription	Colon Smooth Muscle	Colon
14	chr14:64468800-64527200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr14:64469600-64518400	Weak transcription	HMEC	breast
16	chr14:64470000-64490600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr14:64471800-64489800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr14:64471800-64490800	Weak transcription	Spleen	Spleen
19	chr14:64471800-64505200	Weak transcription	Stomach Smooth Muscle	stomach
20	chr14:64473000-64515000	Weak transcription	Hela-S3	cervix
21	chr14:64474400-64505000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr14:64475200-64527200	Weak transcription	Fetal Heart	heart
23	chr14:64475600-64489600	Weak transcription	Lung	lung
24	chr14:64475600-64505600	Weak transcription	Esophagus	oesophagus
25	chr14:64475600-64518400	Weak transcription	Gastric	stomach
26	chr14:64478800-64492200	Weak transcription	Aorta	Aorta
27	chr14:64479000-64489000	Weak transcription	Fetal Thymus	thymus
28	chr14:64479000-64489000	Weak transcription	Right Ventricle	heart
29	chr14:64479200-64526200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr14:64480400-64494200	Weak transcription	HepG2	liver
31	chr14:64481400-64489800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr14:64481400-64503000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr14:64481400-64574000	Weak transcription	Stomach Mucosa	stomach
34	chr14:64481600-64489000	Weak transcription	Fetal Intestine Small	intestine
35	chr14:64481600-64489600	Weak transcription	Brain Germinal Matrix	brain
36	chr14:64481600-64492200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr14:64481600-64502400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr14:64482200-64488800	Weak transcription	Primary B cells from peripheral blood	blood
39	chr14:64482200-64500200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr14:64482400-64493600	Strong transcription	Primary T helper cells PMA-I stimulated	--
41	chr14:64482400-64503800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr14:64482600-64496000	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr14:64482800-64491600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr14:64482800-64503800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr14:64483800-64503800	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr14:64484000-64503800	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr14:64484200-64500400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr14:64484400-64499200	Strong transcription	Primary T cells from cord blood	blood
49	chr14:64485400-64489200	Weak transcription	Fetal Muscle Trunk	muscle
50	chr14:64485600-64488800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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