Variant report

Variant	rs1999796
Chromosome Location	chr1:102364951-102364952
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10493970	0.98[ASN][1000 genomes]
rs11802288	0.98[ASN][1000 genomes]
rs1336801	0.97[ASN][1000 genomes]
rs17125682	0.98[ASN][1000 genomes]
rs17125714	0.98[ASN][1000 genomes]
rs28414610	0.99[ASN][1000 genomes]
rs28649392	0.99[ASN][1000 genomes]
rs3748654	1.00[ASN][1000 genomes]
rs4142810	0.98[ASN][1000 genomes]
rs61149341	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522921	chr1:102170295-102876392	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv522156	chr1:102309649-102421714	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1004240	chr1:102360610-102428344	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1012856	chr1:102360610-102438432	Weak transcription Enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102364400-102365200	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr1:102364600-102365000	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr1:102364600-102365200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr1:102364600-102365200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr1:102364600-102365200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr1:102364800-102365200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr1:102364800-102367000	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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