The 2.0 version of rSNPBase

Variant report

Variant rs200011780
Chromosome Location chr3:42953643-42953644
allele -/ATATAAAA
Outlinks Ensembl   UCSC
Chromatin state (count:66 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:42948400-42954600 Weak transcription NH-A brain
2 chr3:42948600-42954200 Weak transcription Small Intestine intestine
3 chr3:42948600-42955200 Weak transcription Primary T helper naive cells fromperipheralblood blood
4 chr3:42948600-42955600 Weak transcription NHDF-Ad bronchial
5 chr3:42948800-42954600 Weak transcription Primary T helper naive cells from peripheral blood blood
6 chr3:42948800-42954600 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
7 chr3:42949000-42954400 Weak transcription Stomach Mucosa stomach
8 chr3:42949000-42954600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
9 chr3:42949200-42955000 Weak transcription Brain Substantia Nigra brain
10 chr3:42949600-42954000 Strong transcription Skeletal Muscle Male skeletal muscle
11 chr3:42949800-42957000 ZNF genes & repeats Ovary ovary
12 chr3:42950000-42954000 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr3:42950400-42954400 Weak transcription Thymus Thymus
14 chr3:42950800-42954400 Weak transcription Colonic Mucosa Colon
15 chr3:42951200-42954600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
16 chr3:42951600-42954400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
17 chr3:42951800-42953800 ZNF genes & repeats Fetal Kidney kidney
18 chr3:42951800-42954200 Weak transcription Fetal Thymus thymus
19 chr3:42951800-42959000 ZNF genes & repeats Fetal Lung lung
20 chr3:42952000-42953800 Strong transcription Fetal Intestine Large intestine
21 chr3:42952000-42954000 Strong transcription Fetal Adrenal Gland Adrenal Gland
22 chr3:42952000-42955400 Strong transcription Brain Cingulate Gyrus brain
23 chr3:42952000-42958800 ZNF genes & repeats Fetal Muscle Leg muscle
24 chr3:42953000-42954200 Weak transcription Aorta Aorta
25 chr3:42953000-42954200 Weak transcription Esophagus oesophagus
26 chr3:42953000-42954200 Weak transcription Lung lung
27 chr3:42953000-42954200 Weak transcription Sigmoid Colon Sigmoid Colon
28 chr3:42953000-42954600 Weak transcription Pancreas Pancrea
29 chr3:42953000-42958800 ZNF genes & repeats Fetal Muscle Trunk muscle
30 chr3:42953200-42954600 Weak transcription Psoas Muscle Psoas
31 chr3:42953400-42954200 Weak transcription Left Ventricle heart
32 chr3:42953400-42954400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr3:42953400-42954400 Weak transcription Cortex derived primary cultured neurospheres brain
34 chr3:42953400-42954400 Weak transcription Duodenum Mucosa Duodenum
35 chr3:42953400-42954400 Weak transcription Placenta Placenta
36 chr3:42953400-42954400 Weak transcription Rectal Smooth Muscle rectum
37 chr3:42953400-42954600 Weak transcription Brain Anterior Caudate brain
38 chr3:42953400-42954600 Weak transcription Brain Hippocampus Middle brain
39 chr3:42953400-42954600 Weak transcription Rectal Mucosa Donor 29 rectum
40 chr3:42953400-42954600 Weak transcription Right Ventricle heart
41 chr3:42953400-42954600 Weak transcription Osteobl bone
42 chr3:42953400-42955200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
43 chr3:42953600-42954200 Weak transcription Fetal Stomach stomach
44 chr3:42953600-42954400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
45 chr3:42953600-42954400 Weak transcription Breast Myoepithelial Primary Cells Breast
46 chr3:42953600-42954400 Weak transcription Primary hematopoietic stem cells blood
47 chr3:42953600-42954400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
48 chr3:42953600-42954400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
49 chr3:42953600-42954400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
50 chr3:42953600-42954400 Weak transcription Adipose Nuclei Adipose

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Last update: Aug 31, 2015