Variant report

Variant	rs200034428
Chromosome Location	chr10:98561442-98561443
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv895910	chr10:98386483-98640994	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1053801	chr10:98506832-98610101	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
5	esv3422724	chr10:98558962-98563560	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3377231	chr10:98561290-98561457	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Enhancers Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
7	esv3415732	chr10:98561314-98561541	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Enhancers Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
8	esv3418551	chr10:98561360-98561534	Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Bivalent Enhancer Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
9	esv3364474	chr10:98561363-98561561	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Enhancers Bivalent/Poised TSS	n/a	n/a	inside rSNPs	diseases
10	esv3360534	chr10:98561385-98561549	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98561200-98561600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
2	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	ES-WA7 Cell Line	embryonic stem cell
3	chr10:98561200-98561600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr10:98561200-98561600	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr10:98561200-98561600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:98561200-98561600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr10:98561200-98561600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr10:98561200-98561600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
9	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:98561200-98561600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr10:98561200-98561600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
15	chr10:98561200-98561600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
16	chr10:98561200-98561600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
17	chr10:98561200-98561600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
19	chr10:98561200-98561600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
20	chr10:98561200-98561600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
21	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr10:98561200-98561600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
25	chr10:98561200-98561600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
28	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr10:98561200-98561600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
30	chr10:98561200-98561600	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
31	chr10:98561200-98561600	ZNF genes & repeats	Primary B cells from cord blood	blood
32	chr10:98561200-98561600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
33	chr10:98561200-98561600	ZNF genes & repeats	Primary T cells from cord blood	blood
34	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
35	chr10:98561200-98561600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
36	chr10:98561200-98561600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
37	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 2	blood
38	chr10:98561200-98561600	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
39	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
40	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	Primary T helper memory cells from peripheral blood 1	blood
41	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
42	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	Primary T helper 17 cells PMA-I stimulated	--
43	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
44	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
45	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
47	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	Primary T killer naive cells fromperipheralblood	blood
48	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	Primary T killer memory cells from peripheral blood	blood
49	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr10:98561200-98561600	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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