Variant report

Variant	rs200068825
Chromosome Location	chr11:63325839-63325840
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:63319887..63323213-chr11:63323602..63326321,3	MCF-7	breast:
2	chr11:63324205..63327566-chr11:63329739..63333139,4	MCF-7	breast:
3	chr11:63323378..63326273-chr11:63332045..63335020,2	K562	blood:

Variant related genes	Relation type
ENSG00000133328	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	esv3478574	chr11:63325593-63357585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3438288	chr11:63325619-63357715	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3478585	chr11:63325712-63357437	Weak transcription Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63306800-63327600	Weak transcription	Pancreas	Pancrea
2	chr11:63307800-63328200	Weak transcription	Colon Smooth Muscle	Colon
3	chr11:63313600-63328000	Weak transcription	Colonic Mucosa	Colon
4	chr11:63317600-63327800	Weak transcription	Esophagus	oesophagus
5	chr11:63320800-63328000	Weak transcription	Spleen	Spleen
6	chr11:63321400-63328000	Weak transcription	Right Atrium	heart
7	chr11:63321400-63328200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr11:63321800-63328200	Weak transcription	Fetal Brain Male	brain
9	chr11:63322200-63327600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr11:63322200-63327600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr11:63322400-63327400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:63322400-63327600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr11:63322400-63327600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr11:63322400-63327800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr11:63322400-63328000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:63322600-63327200	Weak transcription	HSMMtube	muscle
17	chr11:63322600-63327600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr11:63322600-63327600	Weak transcription	Adipose Nuclei	Adipose
19	chr11:63322600-63328000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:63322600-63328000	Weak transcription	Brain Angular Gyrus	brain
21	chr11:63322800-63326000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:63322800-63327400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr11:63322800-63327600	Weak transcription	GM12878-XiMat	blood
24	chr11:63322800-63328000	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr11:63322800-63328000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr11:63323000-63327600	Weak transcription	Dnd41	blood
27	chr11:63323200-63327600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr11:63323600-63327400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr11:63323600-63328000	Weak transcription	Brain Anterior Caudate	brain
30	chr11:63324200-63331600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr11:63324400-63326000	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr11:63324400-63326200	Weak transcription	Primary T cells fromperipheralblood	blood
33	chr11:63324400-63326400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr11:63324400-63326600	Weak transcription	Primary T cells from cord blood	blood
35	chr11:63324400-63326800	Weak transcription	Thymus	Thymus
36	chr11:63324400-63327400	Weak transcription	Fetal Thymus	thymus
37	chr11:63324400-63327600	Weak transcription	Brain Substantia Nigra	brain
38	chr11:63324400-63327800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr11:63324400-63327800	Weak transcription	Brain Hippocampus Middle	brain
40	chr11:63324600-63326400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr11:63324600-63326400	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr11:63324600-63326800	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr11:63324600-63328000	Weak transcription	HUES6 Cell Line	embryonic stem cell
44	chr11:63324600-63328800	Enhancers	Stomach Mucosa	stomach
45	chr11:63324800-63327200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr11:63324800-63331400	Weak transcription	K562	blood
47	chr11:63325800-63326000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr11:63325800-63326200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr11:63325800-63326200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr11:63325800-63326200	Enhancers	Sigmoid Colon	Sigmoid Colon

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