Variant report

Variant	rs200073706
Chromosome Location	chr10:49674310-49674311
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:49514372..49515875-chr10:49672720..49674716,2	K562	blood:

Variant related genes	Relation type
ENSG00000107643	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv895372	chr10:49576878-49933488	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv467191	chr10:49669142-49735563	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv550813	chr10:49669142-49735563	Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3376035	chr10:49673571-49676119	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3348914	chr10:49673721-49675819	Genic enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:49655200-49677800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr10:49657800-49677600	Weak transcription	HSMMtube	muscle
3	chr10:49665400-49675000	Weak transcription	HUVEC	blood vessel
4	chr10:49668200-49674400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr10:49668400-49676200	Weak transcription	NHLF	lung
6	chr10:49669200-49674800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr10:49670200-49675200	Weak transcription	Osteobl	bone
8	chr10:49670800-49674800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr10:49671000-49680400	Enhancers	Primary hematopoietic stem cells	blood
10	chr10:49671200-49674400	Enhancers	Colon Smooth Muscle	Colon
11	chr10:49671200-49675400	Enhancers	Brain Hippocampus Middle	brain
12	chr10:49671400-49674800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:49671400-49675200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr10:49671400-49675600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:49671800-49674400	Enhancers	Esophagus	oesophagus
16	chr10:49672400-49675200	Bivalent Enhancer	Placenta	Placenta
17	chr10:49672400-49675400	Enhancers	Brain Substantia Nigra	brain
18	chr10:49672400-49677200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr10:49672400-49683400	Weak transcription	Spleen	Spleen
20	chr10:49672600-49674400	Enhancers	Left Ventricle	heart
21	chr10:49672600-49681800	Weak transcription	Aorta	Aorta
22	chr10:49672800-49674600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr10:49672800-49675200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr10:49673000-49681200	Weak transcription	HSMM	muscle
25	chr10:49673200-49674600	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
26	chr10:49673200-49674600	Flanking Active TSS	NHEK	skin
27	chr10:49673400-49674400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr10:49673400-49674400	Active TSS	Right Ventricle	heart
29	chr10:49673400-49674600	Enhancers	NH-A	brain
30	chr10:49673400-49674800	Enhancers	Brain Angular Gyrus	brain
31	chr10:49673400-49675000	Weak transcription	Fetal Thymus	thymus
32	chr10:49673400-49675000	Flanking Active TSS	HMEC	breast
33	chr10:49673600-49674400	Bivalent Enhancer	Adipose Nuclei	Adipose
34	chr10:49673600-49674400	Flanking Active TSS	Brain Anterior Caudate	brain
35	chr10:49673600-49674400	Weak transcription	Ovary	ovary
36	chr10:49673600-49675400	Enhancers	NHDF-Ad	bronchial
37	chr10:49673600-49677600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:49673800-49674400	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr10:49673800-49674400	Flanking Active TSS	Brain Cingulate Gyrus	brain
40	chr10:49673800-49674400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
41	chr10:49673800-49674400	Enhancers	Psoas Muscle	Psoas
42	chr10:49673800-49674400	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
43	chr10:49673800-49675200	Bivalent Enhancer	Fetal Brain Male	brain
44	chr10:49673800-49676200	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr10:49674000-49674400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
46	chr10:49674000-49674400	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
47	chr10:49674000-49674400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
48	chr10:49674000-49674600	Bivalent Enhancer	Fetal Intestine Small	intestine
49	chr10:49674000-49675000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
50	chr10:49674000-49675000	Weak transcription	K562	blood

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