Variant report
| Variant | rs200078784 |
|---|---|
| Chromosome Location | chr22:32829753-32829754 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:16)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:16 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | 22:32012966-32043914..22:32827003-32830758 | K562 | blood: | |
| 2 | 22:32544939-32549151..22:32827003-32830758 | Hela-S3 | cervix: | |
| 3 | 22:32827003-32830758..22:32868055-32872511 | Hela-S3 | cervix: | |
| 4 | 22:32827003-32830758..22:32860159-32865649 | K562 | blood: | |
| 5 | 22:32764253-32784733..22:32827003-32830758 | K562 | blood: | |
| 6 | 22:32053085-32061138..22:32827003-32830758 | GM12878 | blood: | |
| 7 | 22:32740683-32750950..22:32827003-32830758 | K562 | blood: | |
| 8 | 22:32188129-32210582..22:32827003-32830758 | GM12878 | blood: | |
| 9 | 22:32827003-32830758..22:33262063-33266567 | Hela-S3 | cervix: | |
| 10 | 22:31961151-31976153..22:32827003-32830758 | K562 | blood: | |
| 11 | 22:32170492-32188129..22:32827003-32830758 | GM12878 | blood: | |
| 12 | 22:32750950-32761732..22:32827003-32830758 | K562 | blood: | |
| 13 | 22:31864703-31891033..22:32827003-32830758 | K562 | blood: | |
| 14 | 22:32477762-32487457..22:32827003-32830758 | K562 | blood: | |
| 15 | 22:32827003-32830758..22:33452523-33459358 | Hela-S3 | cervix: | |
| 16 | 22:32827003-32830758..22:33190123-33206921 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000232218 | Chromatin interaction |
| ENSG00000198089 | Chromatin interaction |
| ENSG00000199248 | Chromatin interaction |
| ENSG00000185666 | Chromatin interaction |
| ENSG00000271093 | Chromatin interaction |
| ENSG00000100150 | Chromatin interaction |
| ENSG00000184459 | Chromatin interaction |
| ENSG00000184708 | Chromatin interaction |
| ENSG00000205856 | Chromatin interaction |
| ENSG00000230736 | Chromatin interaction |
| ENSG00000128276 | Chromatin interaction |
| ENSG00000100234 | Chromatin interaction |
| ENSG00000243519 | Chromatin interaction |
| ENSG00000241954 | Chromatin interaction |
| ENSG00000205853 | Chromatin interaction |
| ENSG00000100170 | Chromatin interaction |
| ENSG00000241878 | Chromatin interaction |
| ENSG00000100225 | Chromatin interaction |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv459874 | chr22:32574274-32866934 | Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| 2 | nsv588895 | chr22:32574274-32866934 | Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 40 gene(s) | inside rSNPs | diseases |
| 3 | nsv1055701 | chr22:32806595-32845403 | Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive region | 21 gene(s) | inside rSNPs | diseases |
| 4 | esv3349751 | chr22:32829302-32831500 | Enhancers | Chromatin interactive region | 18 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr22:32829400-32830000 | Enhancers | HepG2 | liver |
