Variant report

Variant	rs200160087
Chromosome Location	chr6:147891-147892
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:84)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:84 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PAX5	chr6:147734-147970	GM12878	blood:	n/a	n/a
2	POLR2A	chr6:147805-147994	HepG2	liver:	n/a	n/a
3	PAX5	chr6:147715-148043	GM12878	blood:	n/a	n/a
4	EP300	chr6:147657-148005	GM12878	blood:	n/a	n/a
5	IRF4	chr6:147615-148071	GM12878	blood:	n/a	n/a
6	GABPA	chr6:147788-147959	Hela-S3	cervix:	n/a	n/a
7	POLR2A	chr6:147693-148019	H1-hESC	embryonic stem cell:	n/a	n/a
8	RXRA	chr6:147618-148240	HepG2	liver:	n/a	n/a
9	CBX3	chr6:147664-149413	K562	blood:	n/a	n/a
10	TCF3	chr6:147786-147952	GM12878	blood:	n/a	n/a
11	SPI1	chr6:147764-148009	GM12878	blood:	n/a	n/a
12	POLR2A	chr6:147752-148076	SK-N-MC	brain:	n/a	n/a
13	ZBTB33	chr6:147647-148140	HepG2	liver:	n/a	n/a
14	POLR2A	chr6:147676-148046	H1-hESC	embryonic stem cell:	n/a	n/a
15	SP1	chr6:147644-148039	HepG2	liver:	n/a	n/a
16	REST	chr6:147719-148026	H1-hESC	embryonic stem cell:	n/a	n/a
17	RXRA	chr6:147704-148019	HepG2	liver:	n/a	n/a
18	POLR2A	chr6:147695-148007	GM12878	blood:	n/a	n/a
19	POLR2A	chr6:147663-148138	GM12891	blood:	n/a	n/a
20	SETDB1	chr6:147864-148972	U2OS	brain:	n/a	n/a
21	ZBTB33	chr6:147626-148135	GM12878	blood:	n/a	n/a
22	POU2F2	chr6:147794-148019	GM12878	blood:	n/a	n/a
23	NR2F2	chr6:147572-148179	K562	blood:	n/a	n/a
24	ZBTB33	chr6:147630-148141	K562	blood:	n/a	n/a
25	POLR2A	chr6:147719-148023	GM12878	blood:	n/a	n/a
26	CTCF	chr6:147737-149486	K562	blood:	n/a	n/a
27	POLR2A	chr6:147636-147987	SK-N-SH	brain:	n/a	n/a
28	IRF4	chr6:147769-148000	GM12878	blood:	n/a	n/a
29	POLR2A	chr6:147742-148071	U87	brain:	n/a	n/a
30	REST	chr6:147779-148009	GM12878	blood:	n/a	n/a
31	PBX3	chr6:147770-148003	GM12878	blood:	n/a	n/a
32	SP1	chr6:147806-147936	HepG2	liver:	n/a	n/a
33	ZBTB33	chr6:147670-148110	K562	blood:	n/a	n/a
34	POLR2A	chr6:147676-147988	PANC-1	pancreas:	n/a	n/a
35	SPI1	chr6:147825-147946	GM12878	blood:	n/a	n/a
36	PAX5	chr6:147691-148079	GM12878	blood:	n/a	n/a
37	FOSL2	chr6:147682-148043	HepG2	liver:	n/a	n/a
38	SIN3AK20	chr6:147816-147952	HepG2	liver:	n/a	n/a
39	POLR2A	chr6:147634-148042	U87	brain:	n/a	n/a
40	KAP1	chr6:147765-148943	K562	blood:	n/a	n/a
41	SP1	chr6:147647-148030	GM12878	blood:	n/a	n/a
42	POLR2A	chr6:147475-148079	H1-hESC	embryonic stem cell:	n/a	n/a
43	TCF3	chr6:147781-148098	GM12878	blood:	n/a	n/a
44	EP300	chr6:147807-148032	GM12878	blood:	n/a	n/a
45	SETDB1	chr6:147843-149024	K562	blood:	n/a	n/a
46	TCF12	chr6:147809-147960	GM12878	blood:	n/a	n/a
47	NR2F2	chr6:147699-148086	K562	blood:	n/a	n/a
48	GABPA	chr6:147756-147975	Hela-S3	cervix:	n/a	n/a
49	CTCF	chr6:147755-147949	K562	blood:	n/a	n/a
50	SPI1	chr6:147697-148107	GM12878	blood:	n/a	n/a

No data

Variant related genes	Relation type
LINC00266-3	TF binding region
CICP18	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428134	chr6:60001-653718	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
2	esv2758034	chr6:60001-775274	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv2759401	chr6:60001-775274	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	esv20531	chr6:60031-149517	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv820764	chr6:60031-155228	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv428469	chr6:144702-268735	Active TSS Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv970069	chr6:144819-155708	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv1204372	chr6:147889-147895	Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:147600-148000	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:147600-148200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
3	chr6:147800-148800	Strong transcription	Right Atrium	heart

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