Variant report

Variant	rs200190961
Chromosome Location	chr6:15661876-15661877
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15660394..15662870-chr6:15679792..15681475,2	K562	blood:
2	chr6:15661311..15664347-chr6:16127901..16131243,6	K562	blood:
3	chr6:15659552..15664792-chr6:16126837..16130644,6	MCF-7	breast:
4	chr1:153621962..153623668-chr6:15660534..15662735,2	MCF-7	breast:
5	chr6:15661088..15663422-chr6:16128985..16131574,3	K562	blood:
6	chr6:15655170..15659272-chr6:15659508..15662983,5	MCF-7	breast:
7	chr6:15570441..15572799-chr6:15659666..15662053,2	K562	blood:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3373756	chr6:15661798-15664346	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15615200-15662200	Weak transcription	Gastric	stomach
2	chr6:15616800-15662000	Weak transcription	Placenta	Placenta
3	chr6:15616800-15662200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:15621800-15662200	Weak transcription	Pancreas	Pancrea
5	chr6:15623800-15662000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr6:15628600-15662000	Weak transcription	NHLF	lung
7	chr6:15632200-15662000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr6:15637200-15662000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:15638200-15662000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:15639400-15662200	Weak transcription	Left Ventricle	heart
11	chr6:15642000-15662000	Weak transcription	Brain Angular Gyrus	brain
12	chr6:15642200-15662200	Weak transcription	Aorta	Aorta
13	chr6:15642600-15662200	Weak transcription	Esophagus	oesophagus
14	chr6:15642800-15662000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr6:15642800-15662000	Weak transcription	Lung	lung
16	chr6:15642800-15662000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr6:15643000-15662000	Weak transcription	Fetal Stomach	stomach
18	chr6:15644400-15662000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:15644800-15662000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:15644800-15662000	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:15646000-15662000	Weak transcription	NHDF-Ad	bronchial
22	chr6:15646200-15662000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr6:15647800-15662000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr6:15648200-15662200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr6:15648600-15662000	Weak transcription	Fetal Lung	lung
26	chr6:15648800-15662000	Weak transcription	Fetal Brain Female	brain
27	chr6:15649400-15662000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr6:15649600-15662000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr6:15649800-15662000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr6:15649800-15662000	Weak transcription	Liver	Liver
31	chr6:15649800-15662000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr6:15649800-15662200	Weak transcription	HSMM	muscle
33	chr6:15650800-15662000	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr6:15651000-15662000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr6:15651200-15662000	Weak transcription	Adipose Nuclei	Adipose
36	chr6:15652000-15662000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:15654200-15662000	Weak transcription	Right Atrium	heart
38	chr6:15654400-15662000	Weak transcription	Fetal Heart	heart
39	chr6:15655200-15662000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr6:15655200-15662000	Weak transcription	Osteobl	bone
41	chr6:15655600-15662200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr6:15658200-15662000	Weak transcription	A549	lung
43	chr6:15658800-15662000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:15658800-15662000	Weak transcription	Brain Anterior Caudate	brain
45	chr6:15659000-15662000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr6:15659000-15662000	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr6:15659000-15662000	Weak transcription	NHEK	skin
48	chr6:15659000-15662200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr6:15659200-15662000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr6:15659200-15662000	Weak transcription	HUES64 Cell Line	embryonic stem cell

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