Variant report

Variant	rs200210651
Chromosome Location	chrX:5805593-5805594
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869027	chrX:5052974-6043003	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv2830398	chrX:5618240-5882060	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv949393	chrX:5637763-5883977	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv817415	chrX:5803207-5833017	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:5792600-5808400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chrX:5792600-5821800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chrX:5792800-5809600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chrX:5793600-5806800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chrX:5796000-5809600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chrX:5799600-5828600	Weak transcription	Ovary	ovary
7	chrX:5805200-5806800	Weak transcription	Dnd41	blood
8	chrX:5805200-5809800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chrX:5805400-5820200	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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