Variant report

Variant	rs200216340
Chromosome Location	chr11:57843507-57843508
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:57843424-57843525	HepG2	liver:	n/a	n/a
2	STAT3	chr11:57843229-57843658	MCF10A-Er-Src	breast:	n/a	n/a
3	MYC	chr11:57843346-57843660	MCF10A-Er-Src	breast:	n/a	n/a
4	STAT3	chr11:57843200-57843610	MCF10A-Er-Src	breast:	n/a	n/a
5	JUND	chr11:57843331-57843517	HepG2	liver:	n/a	chr11:57843421-57843432
6	JUN	chr11:57843281-57843607	HepG2	liver:	n/a	n/a
7	EP300	chr11:57843477-57843515	HepG2	liver:	n/a	n/a
8	FOS	chr11:57843218-57843630	MCF10A-Er-Src	breast:	n/a	n/a
9	MYC	chr11:57843317-57843600	MCF10A-Er-Src	breast:	n/a	n/a
10	RCOR1	chr11:57842852-57844109	IMR90	lung:	n/a	n/a
11	FOS	chr11:57843194-57843694	MCF10A-Er-Src	breast:	n/a	n/a
12	ARID3A	chr11:57843315-57843588	HepG2	liver:	n/a	n/a
13	STAT3	chr11:57843201-57843604	MCF10A-Er-Src	breast:	n/a	n/a
14	JUND	chr11:57843245-57843621	HepG2	liver:	n/a	chr11:57843421-57843432
15	CEBPB	chr11:57843315-57843635	HepG2	liver:	n/a	n/a
16	FOS	chr11:57843233-57843657	MCF10A-Er-Src	breast:	n/a	n/a
17	RAD21	chr11:57843324-57843626	IMR90	lung:	n/a	n/a
18	FOS	chr11:57843156-57843667	MCF10A-Er-Src	breast:	n/a	n/a
19	POLR2A	chr11:57843396-57843566	MCF10A-Er-Src	breast:	n/a	n/a
20	POLR2A	chr11:57843357-57843546	MCF10A-Er-Src	breast:	n/a	n/a
21	E2F4	chr11:57843257-57843601	MCF10A-Er-Src	breast:	n/a	n/a
22	CEBPB	chr11:57843233-57843677	IMR90	lung:	n/a	n/a
23	FOSL2	chr11:57843238-57843559	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000254853	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv897589	chr11:57623815-58052357	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv832165	chr11:57806024-58009076	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv523101	chr11:57843506-57871866	Enhancers Weak transcription	TF binding region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57826400-57845200	Weak transcription	Pancreas	Pancrea
2	chr11:57840800-57847200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:57842800-57844000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:57843000-57843600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:57843000-57843800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr11:57843000-57844000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:57843000-57844000	Enhancers	HepG2	liver
8	chr11:57843000-57844000	Enhancers	NHEK	skin
9	chr11:57843000-57844200	Enhancers	HSMM	muscle
10	chr11:57843200-57844000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:57843400-57843800	Enhancers	HSMMtube	muscle
12	chr11:57843400-57844000	Enhancers	HMEC	breast

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