Variant report

Variant	rs200236625
Chromosome Location	chrY:6402278-6402279
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349281	chrY:6077640-6406768	ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv917092	chrY:6390454-7324376	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrY:6401600-6403400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chrY:6401800-6402400	ZNF genes & repeats	Fetal Lung	lung
3	chrY:6401800-6402400	ZNF genes & repeats	A549	lung
4	chrY:6401800-6402600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chrY:6401800-6402600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chrY:6401800-6402800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
7	chrY:6401800-6403600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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