The 2.0 version of rSNPBase

Variant report

Variant rs2002425
Chromosome Location chr15:40449450-40449451
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:45 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr15:40443200-40452800 Weak transcription Primary hematopoietic stem cells short term culture blood
2 chr15:40446800-40450400 Enhancers H9 Cell Line embryonic stem cell
3 chr15:40447000-40449800 Weak transcription Primary neutrophils fromperipheralblood blood
4 chr15:40447800-40451000 Enhancers ES-UCSF4 Cell Line embryonic stem cell
5 chr15:40447800-40452800 Weak transcription ES-WA7 Cell Line embryonic stem cell
6 chr15:40447800-40452800 Weak transcription Right Atrium heart
7 chr15:40448000-40450000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
8 chr15:40448000-40450000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
9 chr15:40448000-40450800 Enhancers HUES64 Cell Line embryonic stem cell
10 chr15:40448000-40452800 Weak transcription Duodenum Mucosa Duodenum
11 chr15:40448000-40452800 Weak transcription Fetal Intestine Large intestine
12 chr15:40448200-40449800 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
13 chr15:40448200-40449800 Weak transcription Placenta Placenta
14 chr15:40448200-40452600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr15:40448200-40452800 Weak transcription Colonic Mucosa Colon
16 chr15:40448200-40452800 Weak transcription Placenta Amnion Placenta Amnion
17 chr15:40448200-40452800 Weak transcription Sigmoid Colon Sigmoid Colon
18 chr15:40448400-40450000 Weak transcription Fetal Intestine Small intestine
19 chr15:40448400-40452400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr15:40448400-40452400 Weak transcription Rectal Mucosa Donor 29 rectum
21 chr15:40448400-40452600 Weak transcription HMEC breast
22 chr15:40448400-40452800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
23 chr15:40448400-40452800 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr15:40448600-40449600 Enhancers HUES48 Cell Line embryonic stem cell
25 chr15:40448600-40449800 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
26 chr15:40448600-40450400 Enhancers iPS-18 Cell Line embryonic stem cell
27 chr15:40448600-40450600 Enhancers iPS-20b Cell Line embryonic stem cell
28 chr15:40448600-40452400 Weak transcription Fetal Thymus thymus
29 chr15:40448600-40452600 Weak transcription Fetal Kidney kidney
30 chr15:40448600-40452800 Weak transcription Esophagus oesophagus
31 chr15:40448600-40452800 Weak transcription Fetal Lung lung
32 chr15:40448600-40452800 Weak transcription Gastric stomach
33 chr15:40448600-40452800 Weak transcription Lung lung
34 chr15:40448600-40452800 Weak transcription NHEK skin
35 chr15:40448800-40450000 Weak transcription ES-I3 Cell Line embryonic stem cell
36 chr15:40448800-40450400 Enhancers iPS-15b Cell Line embryonic stem cell
37 chr15:40448800-40452600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
38 chr15:40448800-40452600 Weak transcription GM12878-XiMat blood
39 chr15:40448800-40452800 Weak transcription Breast Myoepithelial Primary Cells Breast
40 chr15:40448800-40452800 Weak transcription Pancreas Pancrea
41 chr15:40449000-40450600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
42 chr15:40449200-40452600 Weak transcription Stomach Mucosa stomach
43 chr15:40449400-40449800 Weak transcription HUES6 Cell Line embryonic stem cell
44 chr15:40449400-40452800 Weak transcription H1 Cell Line embryonic stem cell
45 chr15:40449400-40452800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell

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Last update: Aug 31, 2015