Variant report

Variant	rs200258231
Chromosome Location	chr18:29205736-29205737
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29145542..29146264-chr18:29205706..29207014,3	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909519	chr18:29172865-29330214	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1816420	chr18:29201648-29207155	Weak transcription Enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1831348	chr18:29205526-29268786	Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29191400-29207000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:29191400-29207800	Weak transcription	Fetal Intestine Large	intestine
3	chr18:29191800-29207800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr18:29192200-29206200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr18:29192400-29217400	Weak transcription	Left Ventricle	heart
6	chr18:29194800-29226800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr18:29195600-29206000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr18:29197200-29210600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr18:29197400-29207800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr18:29197600-29206400	Weak transcription	Fetal Intestine Small	intestine
11	chr18:29197600-29224800	Weak transcription	Brain Anterior Caudate	brain
12	chr18:29197600-29224800	Weak transcription	Brain Germinal Matrix	brain
13	chr18:29197800-29206200	Weak transcription	GM12878-XiMat	blood
14	chr18:29199200-29212400	Weak transcription	Aorta	Aorta
15	chr18:29199800-29217200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr18:29200000-29222400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr18:29200200-29208600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr18:29200200-29222000	Weak transcription	HMEC	breast
19	chr18:29200400-29210400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr18:29200800-29206600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr18:29201600-29206200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr18:29202800-29235000	Weak transcription	Pancreas	Pancrea
23	chr18:29202800-29240200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr18:29203000-29208000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr18:29203200-29217000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr18:29203400-29211000	Weak transcription	HUVEC	blood vessel
27	chr18:29203800-29207800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr18:29203800-29220200	Weak transcription	Ovary	ovary
29	chr18:29203800-29226000	Weak transcription	Fetal Lung	lung
30	chr18:29203800-29227400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr18:29204000-29210000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr18:29204000-29210400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr18:29204000-29210400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr18:29204000-29213600	Weak transcription	Thymus	Thymus
35	chr18:29204000-29228400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr18:29204200-29223200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr18:29204400-29220800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr18:29204400-29228400	Weak transcription	Psoas Muscle	Psoas
39	chr18:29204600-29205800	Enhancers	HepG2	liver
40	chr18:29204600-29213600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr18:29204600-29238600	Weak transcription	Gastric	stomach
42	chr18:29204800-29206200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr18:29204800-29206200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr18:29204800-29206400	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr18:29204800-29206400	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr18:29204800-29208200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr18:29204800-29209000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr18:29204800-29209000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr18:29205000-29215600	Weak transcription	Fetal Stomach	stomach
50	chr18:29205000-29215800	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links