Variant report

Variant	rs200271441
Chromosome Location	chr11:10019950-10019951
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896989	chr11:9951968-10059623	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
3	nsv553475	chr11:10019879-10059623	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9981000-10020000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr11:9981400-10051600	Weak transcription	Aorta	Aorta
3	chr11:9983600-10023200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr11:9985800-10021600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr11:9985800-10023600	Weak transcription	Primary B cells from cord blood	blood
6	chr11:9985800-10049000	Weak transcription	Left Ventricle	heart
7	chr11:9990400-10028200	Weak transcription	Fetal Brain Female	brain
8	chr11:9991200-10060000	Weak transcription	Colon Smooth Muscle	Colon
9	chr11:9994800-10041800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr11:9996000-10024600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr11:9999800-10024000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr11:9999800-10024200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr11:10001400-10066200	Weak transcription	Pancreas	Pancrea
14	chr11:10004000-10020000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr11:10004200-10048600	Weak transcription	Brain Angular Gyrus	brain
16	chr11:10004400-10020200	Weak transcription	Brain Hippocampus Middle	brain
17	chr11:10004400-10021600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:10004400-10024200	Weak transcription	NHLF	lung
19	chr11:10004600-10021800	Weak transcription	Esophagus	oesophagus
20	chr11:10004600-10024000	Weak transcription	Brain Anterior Caudate	brain
21	chr11:10004600-10027600	Weak transcription	Fetal Muscle Trunk	muscle
22	chr11:10004800-10021800	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr11:10004800-10023000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr11:10004800-10023800	Weak transcription	HUVEC	blood vessel
25	chr11:10004800-10023800	Weak transcription	Osteobl	bone
26	chr11:10004800-10024800	Weak transcription	HSMM	muscle
27	chr11:10005000-10024000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr11:10005200-10021400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr11:10005200-10021400	Weak transcription	Placenta	Placenta
30	chr11:10005200-10024000	Weak transcription	Hela-S3	cervix
31	chr11:10005200-10026400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr11:10005200-10027600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:10005400-10022800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr11:10005400-10024400	Weak transcription	H1 Cell Line	embryonic stem cell
35	chr11:10005400-10026400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr11:10005400-10026400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:10005400-10027200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr11:10005400-10027400	Weak transcription	Fetal Stomach	stomach
39	chr11:10005400-10027600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:10005400-10029000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr11:10005600-10024000	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr11:10005600-10026400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
43	chr11:10005800-10024200	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr11:10006800-10026200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr11:10007200-10027200	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr11:10007600-10041800	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr11:10009400-10020400	Weak transcription	Brain Germinal Matrix	brain
48	chr11:10009400-10024200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr11:10009600-10022600	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr11:10010600-10026400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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