Variant report

Variant	rs200297403
Chromosome Location	chr10:18828228-18828229
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:18824996..18829139-chr10:18831210..18835804,4	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NSUN6-1	chr10:18828123-18828228	ENSG00000240291.1

Variant related genes	Relation type
ENSG00000240291	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550042	chr10:18683267-18994583	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1042073	chr10:18806900-18838303	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	esv34545	chr10:18821185-18908294	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	esv1793653	chr10:18827828-18888369	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	esv1794817	chr10:18827828-18888369	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	esv1811259	chr10:18827828-18888369	ZNF genes & repeats Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	esv1840241	chr10:18827828-18888369	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	esv1841068	chr10:18827828-18888369	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	esv1851495	chr10:18827828-18888369	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:18815200-18843600	Weak transcription	A549	lung
2	chr10:18816400-18830400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:18816400-18841800	Strong transcription	Liver	Liver
4	chr10:18816800-18829600	Weak transcription	HSMMtube	muscle
5	chr10:18817400-18829000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr10:18818800-18828400	Weak transcription	Fetal Thymus	thymus
7	chr10:18819800-18829800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:18820000-18828400	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:18820000-18829800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr10:18820800-18841600	Weak transcription	Hela-S3	cervix
11	chr10:18822000-18840400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr10:18822000-18848000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr10:18822200-18830400	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr10:18822400-18829600	Weak transcription	HSMM	muscle
15	chr10:18822400-18833600	Strong transcription	Primary T cells from cord blood	blood
16	chr10:18822600-18829000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr10:18822600-18830600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:18822800-18830600	Strong transcription	Left Ventricle	heart
19	chr10:18822800-18841800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr10:18823200-18831200	Strong transcription	Cortex derived primary cultured neurospheres	brain
21	chr10:18823400-18830400	Strong transcription	Stomach Smooth Muscle	stomach
22	chr10:18823400-18830600	Strong transcription	Fetal Lung	lung
23	chr10:18823400-18834800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr10:18823600-18831000	Strong transcription	Rectal Mucosa Donor 31	rectum
25	chr10:18823600-18836600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr10:18823800-18830400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:18824000-18830600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:18824200-18829800	Weak transcription	Placenta	Placenta
29	chr10:18824200-18830600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr10:18824200-18831200	Strong transcription	Fetal Stomach	stomach
31	chr10:18824200-18831600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr10:18824200-18834800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr10:18824200-18846200	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr10:18824200-18850600	Weak transcription	NHLF	lung
35	chr10:18824400-18829600	Weak transcription	Fetal Kidney	kidney
36	chr10:18824800-18829600	Weak transcription	HepG2	liver
37	chr10:18825000-18830400	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr10:18825000-18835800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr10:18825200-18828400	Strong transcription	Pancreas	Pancrea
40	chr10:18825200-18828600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr10:18825200-18828600	Strong transcription	Colonic Mucosa	Colon
42	chr10:18825200-18828800	Strong transcription	Fetal Intestine Small	intestine
43	chr10:18825200-18829000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr10:18825200-18830400	Strong transcription	HUES6 Cell Line	embryonic stem cell
45	chr10:18825200-18830600	Strong transcription	Fetal Intestine Large	intestine
46	chr10:18825200-18830600	Strong transcription	Ovary	ovary
47	chr10:18825400-18828600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr10:18825400-18828800	Strong transcription	Fetal Brain Female	brain
49	chr10:18825400-18829800	Strong transcription	Right Ventricle	heart
50	chr10:18825400-18830000	Strong transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links