Variant report

Variant	rs200328680
Chromosome Location	chr2:36959678-36959679
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:36959452..36962419-chr2:36962892..36964794,2	K562	blood:
2	chr2:36956863..36959854-chr2:36963372..36965753,3	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007757	chr2:36838387-37011384	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv535643	chr2:36838387-37011384	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1004483	chr2:36875235-37356812	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv535644	chr2:36875235-37356812	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv2762493	chr2:36958342-36965718	Weak transcription Enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv525132	chr2:36959486-36964751	Weak transcription Enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:36941000-36960200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:36942600-36968800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr2:36958000-36962000	Enhancers	Hela-S3	cervix
4	chr2:36958000-36968200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:36958000-36970800	Weak transcription	Ovary	ovary
6	chr2:36958200-36960600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr2:36958200-36963600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr2:36958800-36960200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr2:36958800-36960200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr2:36958800-36961000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:36958800-36961000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:36958800-36961600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:36959000-36959800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr2:36959000-36960000	Enhancers	Osteobl	bone
15	chr2:36959000-36960400	Enhancers	Placenta	Placenta
16	chr2:36959000-36960400	Enhancers	Fetal Stomach	stomach
17	chr2:36959200-36960000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr2:36959200-36960200	Enhancers	NHDF-Ad	bronchial
19	chr2:36959400-36959800	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr2:36959600-36960000	Enhancers	NHEK	skin
21	chr2:36959600-36960400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr2:36959600-36960600	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links