The 2.0 version of rSNPBase

Variant report

Variant rs200330916
Chromosome Location chr18:29713107-29713108
allele -/TAAG
Outlinks Ensembl   UCSC
Chromatin state (count:107 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:29673400-29713800 Weak transcription Spleen Spleen
2 chr18:29673800-29714000 Weak transcription Esophagus oesophagus
3 chr18:29673800-29714200 Weak transcription Ovary ovary
4 chr18:29673800-29715200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
5 chr18:29673800-29715200 Weak transcription Lung lung
6 chr18:29673800-29715800 Weak transcription Colonic Mucosa Colon
7 chr18:29673800-29717000 Weak transcription HSMMtube muscle
8 chr18:29675000-29717200 Weak transcription NH-A brain
9 chr18:29676800-29717200 Weak transcription Brain Germinal Matrix brain
10 chr18:29677000-29713800 Weak transcription Small Intestine intestine
11 chr18:29677000-29715600 Weak transcription Fetal Heart heart
12 chr18:29677000-29717000 Weak transcription Aorta Aorta
13 chr18:29687200-29713600 Strong transcription Dnd41 blood
14 chr18:29689400-29713600 Strong transcription Monocytes-CD14+_RO01746 blood
15 chr18:29689800-29713200 Weak transcription Placenta Amnion Placenta Amnion
16 chr18:29691200-29713600 Weak transcription iPS-15b Cell Line embryonic stem cell
17 chr18:29691400-29715000 Weak transcription ES-I3 Cell Line embryonic stem cell
18 chr18:29695200-29713200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
19 chr18:29695800-29715200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr18:29695800-29717600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr18:29697000-29714200 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr18:29699600-29715400 Weak transcription Left Ventricle heart
23 chr18:29702200-29713600 Strong transcription Primary T helper cells fromperipheralblood blood
24 chr18:29704000-29713600 Strong transcription Primary B cells from cord blood blood
25 chr18:29704200-29714600 Weak transcription Cortex derived primary cultured neurospheres brain
26 chr18:29705400-29713800 Weak transcription Brain Anterior Caudate brain
27 chr18:29705400-29714000 Weak transcription Brain Hippocampus Middle brain
28 chr18:29705400-29714200 Weak transcription HUVEC blood vessel
29 chr18:29705400-29715400 Weak transcription Fetal Kidney kidney
30 chr18:29705400-29716400 Weak transcription Stomach Smooth Muscle stomach
31 chr18:29705400-29717800 Weak transcription A549 lung
32 chr18:29705600-29713800 Weak transcription Skeletal Muscle Male skeletal muscle
33 chr18:29705800-29713400 Weak transcription Psoas Muscle Psoas
34 chr18:29705800-29713400 Weak transcription Thymus Thymus
35 chr18:29705800-29713600 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
36 chr18:29705800-29715200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
37 chr18:29706000-29713400 Weak transcription Rectal Smooth Muscle rectum
38 chr18:29706200-29715200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
39 chr18:29706200-29715600 Weak transcription Fetal Muscle Leg muscle
40 chr18:29706200-29718600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
41 chr18:29706800-29713800 Weak transcription H1 Cell Line embryonic stem cell
42 chr18:29707200-29715200 Weak transcription Fetal Lung lung
43 chr18:29707400-29718400 Weak transcription Primary T killer memory cells from peripheral blood blood
44 chr18:29707800-29717200 Weak transcription HSMM muscle
45 chr18:29708000-29715000 Weak transcription Placenta Placenta
46 chr18:29708800-29713600 Weak transcription Fetal Stomach stomach
47 chr18:29708800-29715000 Weak transcription Pancreas Pancrea
48 chr18:29709200-29717400 Weak transcription Brain Substantia Nigra brain
49 chr18:29709200-29718200 Weak transcription K562 blood
50 chr18:29709200-29718400 Weak transcription Primary T helper naive cells fromperipheralblood blood

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Last update: Aug 31, 2015