Variant report

Variant	rs200339918
Chromosome Location	chr4:62616316-62616317
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461377	chr4:62368762-62883431	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594328	chr4:62368762-62883431	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv829949	chr4:62615637-62761629	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62609600-62616600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:62610200-62616600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:62610400-62616600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:62610400-62625400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr4:62611000-62616400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:62615200-62618000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:62615400-62617600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
8	chr4:62615400-62620200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
9	chr4:62615600-62619800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
10	chr4:62615600-62619800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
11	chr4:62615600-62620000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
12	chr4:62615600-62620000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
13	chr4:62616000-62618200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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