Variant report

Variant	rs200341876
Chromosome Location	chr4:174090001-174090002
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174089447..174090027-chr7:32534803..32535652,2	Hela-S3	cervix:
2	chr4:174088355..174091772-chr4:174254077..174258410,8	K562	blood:
3	chr4:174088713..174091772-chr4:174254390..174258410,4	K562	blood:

Variant related genes	Relation type
ENSG00000164104	Chromatin interaction
ENSG00000105778	Chromatin interaction
ENSG00000106355	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3357841	chr4:174088902-174091750	Flanking Active TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv3403467	chr4:174088977-174092225	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	esv1798285	chr4:174089048-174091110	Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv1798967	chr4:174089048-174091110	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	esv1799224	chr4:174089048-174091110	Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	esv1804824	chr4:174089048-174091110	Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	esv1810173	chr4:174089048-174091110	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	esv1834006	chr4:174089048-174091110	Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	esv1841737	chr4:174089048-174091110	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	esv1845734	chr4:174089048-174091110	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	esv1833960	chr4:174089080-174091110	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	esv3464637	chr4:174089802-174092550	Enhancers Flanking Active TSS Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
13	esv3464638	chr4:174089802-174092550	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174088400-174091400	Active TSS	HUES6 Cell Line	embryonic stem cell
2	chr4:174088400-174091600	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr4:174088400-174091600	Active TSS	A549	lung
4	chr4:174088400-174092200	Active TSS	H9 Cell Line	embryonic stem cell
5	chr4:174088600-174091400	Active TSS	Rectal Mucosa Donor 31	rectum
6	chr4:174088600-174092000	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr4:174088800-174090200	Active TSS	Fetal Brain Male	brain
8	chr4:174088800-174091400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:174088800-174091400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:174088800-174091400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:174088800-174091400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:174088800-174091400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:174088800-174091400	Active TSS	Fetal Intestine Small	intestine
14	chr4:174088800-174091400	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr4:174088800-174091400	Active TSS	Rectal Smooth Muscle	rectum
16	chr4:174088800-174091600	Active TSS	H1 Cell Line	embryonic stem cell
17	chr4:174088800-174091600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr4:174088800-174091600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:174088800-174091600	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr4:174088800-174091600	Active TSS	Brain Inferior Temporal Lobe	brain
21	chr4:174088800-174091600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr4:174088800-174091800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr4:174088800-174091800	Active TSS	Colonic Mucosa	Colon
24	chr4:174088800-174092000	Active TSS	ES-I3 Cell Line	embryonic stem cell
25	chr4:174088800-174092000	Active TSS	Fetal Kidney	kidney
26	chr4:174088800-174092200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr4:174088800-174092200	Active TSS	HSMMtube	muscle
28	chr4:174088800-174092400	Active TSS	Thymus	Thymus
29	chr4:174089000-174091200	Active TSS	Fetal Brain Female	brain
30	chr4:174089000-174091400	Active TSS	iPS-15b Cell Line	embryonic stem cell
31	chr4:174089000-174091400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr4:174089000-174091400	Active TSS	Brain Hippocampus Middle	brain
33	chr4:174089000-174091400	Active TSS	Colon Smooth Muscle	Colon
34	chr4:174089000-174091400	Active TSS	Fetal Intestine Large	intestine
35	chr4:174089000-174091600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr4:174089000-174091600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr4:174089000-174091600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr4:174089000-174091600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr4:174089000-174091600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr4:174089000-174091600	Active TSS	Esophagus	oesophagus
41	chr4:174089000-174091600	Active TSS	Gastric	stomach
42	chr4:174089000-174091600	Active TSS	Pancreas	Pancrea
43	chr4:174089000-174091600	Active TSS	Right Ventricle	heart
44	chr4:174089000-174091600	Active TSS	Sigmoid Colon	Sigmoid Colon
45	chr4:174089000-174091600	Active TSS	NHDF-Ad	bronchial
46	chr4:174089000-174091800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
47	chr4:174089000-174091800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr4:174089000-174091800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr4:174089000-174091800	Active TSS	Psoas Muscle	Psoas
50	chr4:174089000-174092200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links