Variant report

Variant	rs200345280
Chromosome Location	chr18:25757102-25757103
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv9622	chr18:25749905-26032816	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3425660	chr18:25756154-25759202	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25749800-25759200	Active TSS	Right Ventricle	heart
2	chr18:25752400-25759600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr18:25752600-25759200	Active TSS	Right Atrium	heart
4	chr18:25753200-25758600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr18:25753400-25759600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr18:25753600-25758800	Active TSS	NH-A	brain
7	chr18:25753600-25759200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr18:25753800-25758800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr18:25754000-25758800	Active TSS	Fetal Kidney	kidney
10	chr18:25754000-25759200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
11	chr18:25754200-25758600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr18:25754200-25758800	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr18:25754200-25759000	Active TSS	Brain Angular Gyrus	brain
14	chr18:25754200-25759000	Active TSS	Brain Cingulate Gyrus	brain
15	chr18:25754200-25759600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr18:25754400-25759200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr18:25754400-25759200	Active TSS	Brain Inferior Temporal Lobe	brain
18	chr18:25754600-25758600	Active TSS	Brain Hippocampus Middle	brain
19	chr18:25754600-25758600	Active TSS	HSMMtube	muscle
20	chr18:25754600-25758800	Active TSS	Brain Substantia Nigra	brain
21	chr18:25754600-25759400	Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr18:25754800-25759000	Active TSS	Brain Anterior Caudate	brain
23	chr18:25755000-25757400	Active TSS	Fetal Brain Male	brain
24	chr18:25755000-25758600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr18:25755000-25758600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr18:25755000-25759000	Active TSS	H9 Cell Line	embryonic stem cell
27	chr18:25755200-25758400	Active TSS	Muscle Satellite Cultured Cells	--
28	chr18:25755200-25758600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr18:25755200-25758600	Active TSS	A549	lung
30	chr18:25755200-25758600	Active TSS	NHLF	lung
31	chr18:25755200-25758800	Active TSS	Aorta	Aorta
32	chr18:25755400-25758200	Active TSS	Osteobl	bone
33	chr18:25755400-25758800	Active TSS	HSMM	muscle
34	chr18:25756000-25757800	Bivalent/Poised TSS	Spleen	Spleen
35	chr18:25756000-25758200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr18:25756000-25758400	Active TSS	Gastric	stomach
37	chr18:25756000-25758400	Active TSS	Ovary	ovary
38	chr18:25756000-25758400	Active TSS	Dnd41	blood
39	chr18:25756000-25759000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr18:25756200-25757200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
41	chr18:25756200-25758200	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
42	chr18:25756200-25758800	Active TSS	Left Ventricle	heart
43	chr18:25756400-25757400	Enhancers	Primary B cells from cord blood	blood
44	chr18:25756400-25758200	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
45	chr18:25756400-25758400	Bivalent/Poised TSS	Thymus	Thymus
46	chr18:25756400-25758600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr18:25756400-25758600	Active TSS	HepG2	liver
48	chr18:25756600-25757200	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
49	chr18:25756600-25757600	Enhancers	Primary B cells from peripheral blood	blood
50	chr18:25756600-25757800	Bivalent/Poised TSS	Duodenum Mucosa	Duodenum

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