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Variant report
Variant
rs200347316
Chromosome Location
chr1:84507578-84507579
allele
-/AG
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:3)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
(count:3 , 50 per page) page:
1
No.
Distal block
Cell Line
Cell type
Cell Stage
1
chr1:84507393..84510373-chr17:41380299..41381957,2
MCF-7
breast:
2
chr1:84507131..84508951-chr1:84514289..84516421,2
K562
blood:
3
chr1:84506312..84509081-chr1:84514938..84517601,2
MCF-7
breast:
No data
No data
No data
Variant related genes
Relation type
ENSG00000236383
Chromatin interaction
Extended variants information (count: 2 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv1732
chr1:84499098-84544635
Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription
TF binding regionCpG islandChromatin interactive regionlncRNA
17 gene(s)
inside rSNPs
diseases
2
nsv508360
chr1:84500230-84524997
Bivalent Enhancer Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS
Chromatin interactive region
3 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links