Variant report

Variant	rs200371818
Chromosome Location	chrX:73639340-73639341
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364045	chrX:72896383-73699363	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	301 gene(s)	inside rSNPs	diseases
2	nsv916758	chrX:73546406-74420929	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv532878	chrX:73603325-74057587	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv3429687	chrX:73639127-73643875	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:73638800-73639400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chrX:73638800-73643200	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chrX:73639000-73639400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chrX:73639200-73639400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chrX:73639200-73639400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
6	chrX:73639200-73639400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chrX:73639200-73639400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chrX:73639200-73639400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chrX:73639200-73639400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
10	chrX:73639200-73639400	Enhancers	HMEC	breast
11	chrX:73639200-73639400	Enhancers	NH-A	brain
12	chrX:73639200-73639400	Enhancers	NHEK	skin
13	chrX:73639200-73639600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chrX:73639200-73639600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chrX:73639200-73639800	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
16	chrX:73639200-73640000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
17	chrX:73639200-73643000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chrX:73639200-73643000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
19	chrX:73639200-73643000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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