Variant report

Variant	rs200394444
Chromosome Location	chr6:66011660-66011661
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:66011226-66011690	GM12892	blood:	n/a	n/a
2	POLR2A	chr6:66011092-66011771	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr6:66011095-66011694	GM12892	blood:	n/a	n/a
4	GABPA	chr6:66011424-66011682	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr6:66011252-66011663	GM12892	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:66011626-66011676	SK-N-SH	brain:	n/a
2	chr6:66011626-66011676	HEK293	kidney:	embryo
3	chr6:66011626-66011676	Jurkat	blood:	n/a
4	chr6:66011626-66011676	Hepatocyte	liver:	n/a
5	chr6:66011626-66011676	HCF	heart:	n/a
6	chr6:66011626-66011676	GM12878	blood:	n/a
7	chr6:66011626-66011676	CMK	blood:	n/a
8	chr6:66011626-66011676	ECC-1	luminal epithelium:	n/a
9	chr6:66011626-66011676	HEEpiC	esophagus:	n/a
10	chr6:66011626-66011676	AoSMC	blood vessel:	n/a
11	chr6:66011626-66011676	AG09309	skin:	n/a
12	chr6:66011626-66011676	NHBE	bronchial:	n/a
13	chr6:66011626-66011676	AG04449	skin:	fetal
14	chr6:66011626-66011676	HepG2	liver:	n/a
15	chr6:66011626-66011676	MCF-7	breast:	n/a
16	chr6:66011626-66011676	NT2-D1	testis:	n/a
17	chr6:66011626-66011676	MCF10A-Er-Src	breast:	n/a
18	chr6:66011626-66011676	BE2_C	brain:	n/a
19	chr6:66011626-66011676	GM06990	blood:	n/a
20	chr6:66011626-66011676	GM19239	blood:	n/a
21	chr6:66011626-66011676	HPAEpiC	pulmonary alveolar:	n/a
22	chr6:66011626-66011676	AG09319	gingival:	n/a
23	chr6:66011626-66011676	ovcar-3	ovarian:	n/a
24	chr6:66011626-66011676	A549	lung:	n/a
25	chr6:66011626-66011676	PANC-1	pancreas:	n/a
26	chr6:66011626-66011676	HNPCEpiC	eye:	n/a
27	chr6:66011626-66011676	Hela-S3	cervix:	n/a
28	chr6:66011626-66011676	HCPEpiC	choroid plexus:	n/a
29	chr6:66011626-66011676	HRCEpiC	kidney:	n/a
30	chr6:66011626-66011676	NB4	blood:	n/a
31	chr6:66011626-66011676	BJ	skin:	n/a
32	chr6:66011626-66011676	HCM	heart:	n/a
33	chr6:66011626-66011676	HIPEpiC	eye:	n/a
34	chr6:66011626-66011676	HL-60	blood:	n/a
35	chr6:66011626-66011676	GM12892	blood:	n/a
36	chr6:66011626-66011676	AG10803	skin:	n/a
37	chr6:66011626-66011676	AG04450	lung:	fetal
38	chr6:66011626-66011676	H1-hESC	embryonic stem cell:	embryo
39	chr6:66011626-66011676	PFSK-1	brain:	n/a
40	chr6:66011626-66011676	HCT-116	colon:	n/a
41	chr6:66011626-66011676	SKMC	muscle:	n/a
42	chr6:66011626-66011676	PrEC	prostate:	n/a
43	chr6:66011626-66011676	HAEpiC	amniotic membrane:	n/a
44	chr6:66011626-66011676	SK-N-SH_RA	brain:	n/a
45	chr6:66011626-66011676	K562	blood:	n/a
46	chr6:66011626-66011676	NH-A	brain:	n/a
47	chr6:66011626-66011676	HRE	kidney:	n/a
48	chr6:66011626-66011676	SAEC	small airway:	n/a
49	chr6:66011626-66011676	HMEC	breast:	n/a
50	chr6:66011626-66011676	LNCaP	prostate:	n/a

No data

Variant related genes	Relation type
ENSG00000214558	TF binding region
ENSG00000214558	CpG island

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv930945	chr6:65814264-66045031	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv933353	chr6:65814264-66045031	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv886011	chr6:65873577-66237309	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv886012	chr6:65905998-66354809	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	esv2752619	chr6:65917536-66062893	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv886013	chr6:65918809-66050797	Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv933487	chr6:65947165-66134134	Flanking Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv516417	chr6:65952526-66083780	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv470823	chr6:65969239-66052674	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
10	nsv886014	chr6:65996855-66061173	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv603431	chr6:66002389-66052675	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
12	nsv886015	chr6:66002389-66061173	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
13	nsv886016	chr6:66002389-66103595	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
14	nsv886017	chr6:66002887-66049528	Enhancers	TF binding region CpG island lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
15	nsv603432	chr6:66006148-66052675	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
16	nsv462978	chr6:66006820-66072542	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
17	nsv462979	chr6:66006820-66072542	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
18	nsv603433	chr6:66006820-66072542	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
19	nsv886018	chr6:66009103-66091351	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
20	nsv886019	chr6:66009103-66103595	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
21	nsv981155	chr6:66011313-66035737	Enhancers	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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