Variant report

Variant	rs200400658
Chromosome Location	chr9:115648856-115648857
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:115647367..115649652-chr9:115652587..115654849,2	MCF-7	breast:
2	chr9:115647996..115651532-chr9:115651792..115654330,5	K562	blood:
3	chr9:115647996..115649794-chr9:115652153..115653845,2	K562	blood:

Variant related genes	Relation type
ENSG00000119457	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758198	chr9:115240454-116002951	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	esv2759710	chr9:115240454-116002951	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv893733	chr9:115397206-115712068	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	esv2422302	chr9:115550339-115656433	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv1047000	chr9:115610445-115884038	ZNF genes & repeats Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	esv2757352	chr9:115648457-115664299	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:115624200-115652600	Weak transcription	Fetal Heart	heart
2	chr9:115626400-115650800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:115631800-115652200	Weak transcription	Gastric	stomach
4	chr9:115633000-115652600	Weak transcription	Left Ventricle	heart
5	chr9:115633200-115652400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr9:115633200-115652400	Weak transcription	Right Ventricle	heart
7	chr9:115633400-115649200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr9:115633800-115652600	Weak transcription	Liver	Liver
9	chr9:115634800-115651800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr9:115635000-115650800	Weak transcription	Fetal Thymus	thymus
11	chr9:115635600-115649000	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr9:115638600-115650000	Weak transcription	Fetal Brain Female	brain
13	chr9:115643200-115652600	Weak transcription	Brain Anterior Caudate	brain
14	chr9:115643200-115652800	Weak transcription	Ovary	ovary
15	chr9:115643400-115651600	Weak transcription	Primary B cells from cord blood	blood
16	chr9:115643400-115652400	Weak transcription	Brain Substantia Nigra	brain
17	chr9:115643600-115650000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr9:115643600-115650400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr9:115643600-115652200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr9:115643600-115652600	Weak transcription	Brain Angular Gyrus	brain
21	chr9:115643800-115650000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr9:115643800-115651800	Weak transcription	Lung	lung
23	chr9:115644000-115649000	Weak transcription	Fetal Intestine Large	intestine
24	chr9:115644000-115649400	Weak transcription	Fetal Muscle Leg	muscle
25	chr9:115644000-115649400	Weak transcription	Stomach Smooth Muscle	stomach
26	chr9:115644000-115649600	Weak transcription	Fetal Intestine Small	intestine
27	chr9:115644000-115650800	Weak transcription	Aorta	Aorta
28	chr9:115644000-115651800	Weak transcription	Spleen	Spleen
29	chr9:115644000-115652000	Weak transcription	Pancreas	Pancrea
30	chr9:115644000-115652800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr9:115644200-115652200	Weak transcription	Adipose Nuclei	Adipose
32	chr9:115644200-115652200	Weak transcription	Brain Hippocampus Middle	brain
33	chr9:115644200-115652600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr9:115644800-115650800	Weak transcription	Fetal Stomach	stomach
35	chr9:115645600-115651800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr9:115646000-115649000	Enhancers	Placenta Amnion	Placenta Amnion
37	chr9:115646600-115649600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr9:115646800-115651600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr9:115646800-115651800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr9:115647000-115652800	Weak transcription	HSMMtube	muscle
41	chr9:115647200-115652600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr9:115647400-115652200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr9:115647400-115652600	Weak transcription	HMEC	breast
44	chr9:115647400-115652600	Weak transcription	HSMM	muscle
45	chr9:115647600-115652200	Weak transcription	Osteobl	bone
46	chr9:115648600-115649800	Genic enhancers	Monocytes-CD14+_RO01746	blood

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