Variant report

Variant	rs200427033
Chromosome Location	chr14:21953515-21953516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:21948837..21951421-chr14:21953212..21956640,4	MCF-7	breast:
2	chr14:21953304..21957637-chr14:21977622..21980273,4	K562	blood:

Variant related genes	Relation type
ENSG00000165819	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530009	chr14:21377022-22044608	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
2	nsv530769	chr14:21407536-22139126	Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	117 gene(s)	inside rSNPs	diseases
3	nsv1036762	chr14:21507093-22101805	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
4	nsv541976	chr14:21507093-22101805	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
5	esv3518898	chr14:21805983-22077584	Flanking Active TSS Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
6	esv3518899	chr14:21805983-22077584	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv1054013	chr14:21868964-21992109	Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv541991	chr14:21868964-21992109	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
9	nsv530011	chr14:21876973-21985341	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	esv2422459	chr14:21931624-22169502	Genic enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
11	esv994931	chr14:21947144-21956367	Genic enhancers Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
12	esv3402606	chr14:21950812-21956610	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	esv3486915	chr14:21951462-21955760	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	esv3381254	chr14:21951637-21955985	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
15	esv3486916	chr14:21951837-21955660	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
16	esv3420489	chr14:21952118-21954966	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
17	esv2506236	chr14:21952194-21955404	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
18	esv8853	chr14:21952388-21954758	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
19	esv3415807	chr14:21952395-21954771	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
20	esv3383439	chr14:21952434-21954729	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
21	esv3486914	chr14:21952434-21954737	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
22	esv2080110	chr14:21952439-21954736	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
23	esv3526530	chr14:21952453-21954750	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
24	esv3486913	chr14:21952456-21954710	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
25	esv3526519	chr14:21952475-21954757	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
26	esv3526541	chr14:21952531-21954734	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
27	esv3486912	chr14:21952531-21954741	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
28	esv3486917	chr14:21952625-21954663	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
29	esv3526552	chr14:21952625-21954663	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21946000-21960600	Weak transcription	Small Intestine	intestine
2	chr14:21946200-21955600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:21946200-21955600	Weak transcription	Gastric	stomach
4	chr14:21946200-21955600	Weak transcription	Left Ventricle	heart
5	chr14:21946200-21955600	Weak transcription	Ovary	ovary
6	chr14:21946200-21955600	Weak transcription	Thymus	Thymus
7	chr14:21946200-21977600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr14:21946400-21955400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:21946400-21955600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr14:21946400-21958000	Weak transcription	Pancreas	Pancrea
11	chr14:21946400-21958800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr14:21946400-21960800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr14:21946400-21971400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr14:21946600-21954600	Weak transcription	HSMMtube	muscle
15	chr14:21946600-21954800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr14:21946600-21954800	Weak transcription	K562	blood
17	chr14:21946600-21955000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr14:21946600-21955000	Weak transcription	Fetal Thymus	thymus
19	chr14:21946600-21955400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr14:21946600-21955400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr14:21946600-21955600	Weak transcription	Brain Germinal Matrix	brain
22	chr14:21946600-21955600	Weak transcription	Colonic Mucosa	Colon
23	chr14:21946600-21955600	Weak transcription	Fetal Muscle Leg	muscle
24	chr14:21946600-21955600	Weak transcription	Psoas Muscle	Psoas
25	chr14:21946600-21955600	Weak transcription	Right Ventricle	heart
26	chr14:21946600-21955600	Weak transcription	Spleen	Spleen
27	chr14:21946600-21955800	Weak transcription	Fetal Brain Female	brain
28	chr14:21946600-21958000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr14:21946600-21960400	Weak transcription	Stomach Mucosa	stomach
30	chr14:21946600-21960800	Weak transcription	Aorta	Aorta
31	chr14:21946800-21954600	Weak transcription	Brain Hippocampus Middle	brain
32	chr14:21946800-21954800	Weak transcription	Osteobl	bone
33	chr14:21946800-21955000	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr14:21946800-21955400	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr14:21946800-21955600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr14:21946800-21955600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr14:21946800-21955600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr14:21946800-21955600	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr14:21946800-21955600	Weak transcription	A549	lung
40	chr14:21946800-21955600	Weak transcription	GM12878-XiMat	blood
41	chr14:21946800-21955600	Weak transcription	NHEK	skin
42	chr14:21946800-21956200	Weak transcription	NH-A	brain
43	chr14:21946800-21956400	Weak transcription	Hela-S3	cervix
44	chr14:21946800-21956800	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr14:21946800-21956800	Weak transcription	Brain Angular Gyrus	brain
46	chr14:21946800-21956800	Weak transcription	HMEC	breast
47	chr14:21946800-21959000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr14:21946800-21959000	Weak transcription	Fetal Brain Male	brain
49	chr14:21946800-21960800	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr14:21947000-21954600	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links