Variant report

Variant	rs200464015
Chromosome Location	chr11:9594241-9594242
allele	-/AT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:9594236-9595686	PFSK-1	brain:	n/a	n/a
2	FOXA1	chr11:9594088-9595260	HepG2	liver:	n/a	n/a
3	MAX	chr11:9594224-9596603	GM12878	blood:	n/a	chr11:9594393-9594404 chr11:9594393-9594403 chr11:9595186-9595197 chr11:9595186-9595197 chr11:9595391-9595400 chr11:9594394-9594403 chr11:9595391-9595400 chr11:9594395-9594402 chr11:9594390-9594405 chr11:9595188-9595197 chr11:9594392-9594407 chr11:9595392-9595399
4	MYBL2	chr11:9594191-9595591	HepG2	liver:	n/a	n/a
5	USF2	chr11:9594208-9594556	Hela-S3	cervix:	n/a	n/a
6	MXI1	chr11:9593222-9598393	SK-N-SH	brain:	n/a	n/a
7	USF1	chr11:9594134-9594563	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr11:9594208-9595540	U87	brain:	n/a	n/a
9	MAX	chr11:9594223-9595573	HUVEC	blood vessel:	n/a	chr11:9594393-9594404 chr11:9594393-9594403 chr11:9595186-9595197 chr11:9595186-9595197 chr11:9595391-9595400 chr11:9594394-9594403 chr11:9595391-9595400 chr11:9594395-9594402 chr11:9594390-9594405 chr11:9595188-9595197 chr11:9594392-9594407 chr11:9595392-9595399
10	NFIC	chr11:9594172-9595518	ECC-1	luminal epithelium:	n/a	n/a
11	POLR2A	chr11:9593829-9601404	MCF10A-Er-Src	breast:	n/a	n/a
12	NFIC	chr11:9594166-9595416	ECC-1	luminal epithelium:	n/a	n/a
13	E2F6	chr11:9594200-9595394	A549	lung:	n/a	chr11:9595087-9595097 chr11:9595083-9595094 chr11:9595086-9595097 chr11:9595089-9595096 chr11:9595344-9595354 chr11:9595363-9595373 chr11:9595088-9595096 chr11:9595088-9595096 chr11:9595085-9595096 chr11:9595292-9595301 chr11:9595088-9595096 chr11:9595201-9595213
14	HEY1	chr11:9594201-9595598	HepG2	liver:	n/a	chr11:9595294-9595309 chr11:9595297-9595312 chr11:9595341-9595356 chr11:9594830-9594845
15	USF1	chr11:9594171-9594520	A549	lung:	n/a	n/a
16	NR2F2	chr11:9594123-9595362	K562	blood:	n/a	n/a
17	MAX	chr11:9594214-9595556	HepG2	liver:	n/a	chr11:9594393-9594404 chr11:9594393-9594403 chr11:9595186-9595197 chr11:9595186-9595197 chr11:9595391-9595400 chr11:9594394-9594403 chr11:9595391-9595400 chr11:9594395-9594402 chr11:9594390-9594405 chr11:9595188-9595197 chr11:9594392-9594407 chr11:9595392-9595399
18	POLR2A	chr11:9594122-9595677	U87	brain:	n/a	n/a
19	POLR2A	chr11:9593092-9599445	IMR90	lung:	n/a	n/a
20	MBD4	chr11:9594203-9594653	HepG2	liver:	n/a	n/a
21	USF2	chr11:9594237-9594563	H1-hESC	embryonic stem cell:	n/a	n/a
22	SIN3AK20	chr11:9593713-9597257	PANC-1	pancreas:	n/a	n/a
23	POLR2A	chr11:9594027-9595660	K562	blood:	n/a	n/a
24	MAX	chr11:9594143-9595653	MCF-7	breast:	n/a	chr11:9594393-9594404 chr11:9594393-9594403 chr11:9595186-9595197 chr11:9595186-9595197 chr11:9595391-9595400 chr11:9594394-9594403 chr11:9595391-9595400 chr11:9594395-9594402 chr11:9594390-9594405 chr11:9595188-9595197 chr11:9594392-9594407 chr11:9595392-9595399
25	POLR2A	chr11:9594225-9595461	HUVEC	blood vessel:	n/a	n/a
26	MAX	chr11:9594131-9595862	HCT-116	colon:	n/a	chr11:9594393-9594404 chr11:9594393-9594403 chr11:9595186-9595197 chr11:9595186-9595197 chr11:9595391-9595400 chr11:9594394-9594403 chr11:9595391-9595400 chr11:9594395-9594402 chr11:9594390-9594405 chr11:9595188-9595197 chr11:9594392-9594407 chr11:9595392-9595399
27	MYC	chr11:9594199-9595794	K562	blood:	n/a	chr11:9594393-9594404 chr11:9594393-9594403 chr11:9595186-9595197 chr11:9595186-9595197 chr11:9595391-9595400 chr11:9594394-9594403 chr11:9595391-9595400 chr11:9594395-9594402 chr11:9594390-9594405 chr11:9595188-9595197 chr11:9594392-9594407 chr11:9595392-9595399
28	USF2	chr11:9594222-9594602	HepG2	liver:	n/a	n/a
29	MXI1	chr11:9594221-9595635	HepG2	liver:	n/a	n/a
30	BHLHE40	chr11:9594155-9595523	HepG2	liver:	n/a	chr11:9595292-9595308 chr11:9595308-9595324 chr11:9595390-9595406 chr11:9595300-9595316 chr11:9595337-9595353
31	MAX	chr11:9594109-9595347	MCF-7	breast:	n/a	chr11:9594393-9594404 chr11:9594393-9594403 chr11:9595186-9595197 chr11:9595186-9595197 chr11:9594394-9594403 chr11:9594395-9594402 chr11:9594390-9594405 chr11:9595188-9595197 chr11:9594392-9594407
32	POLR2A	chr11:9594220-9597525	Hela-S3	cervix:	n/a	n/a
33	E2F6	chr11:9594233-9595642	H1-hESC	embryonic stem cell:	n/a	chr11:9595087-9595097 chr11:9595083-9595094 chr11:9595086-9595097 chr11:9595089-9595096 chr11:9595344-9595354 chr11:9595363-9595373 chr11:9595088-9595096 chr11:9595088-9595096 chr11:9595085-9595096 chr11:9595292-9595301 chr11:9595088-9595096 chr11:9595201-9595213
34	FOSL2	chr11:9594227-9595328	HepG2	liver:	n/a	chr11:9595268-9595277
35	EP300	chr11:9594195-9595339	A549	lung:	n/a	chr11:9594411-9594421 chr11:9594759-9594775
36	REST	chr11:9594237-9595294	A549	lung:	n/a	chr11:9594524-9594542
37	MAX	chr11:9594229-9597239	Hela-S3	cervix:	n/a	chr11:9594393-9594404 chr11:9594393-9594403 chr11:9595186-9595197 chr11:9595186-9595197 chr11:9595391-9595400 chr11:9594394-9594403 chr11:9595391-9595400 chr11:9594395-9594402 chr11:9594390-9594405 chr11:9595188-9595197 chr11:9594392-9594407 chr11:9595392-9595399
38	USF1	chr11:9594135-9594690	A549	lung:	n/a	n/a
39	CHD1	chr11:9594023-9600398	IMR90	lung:	n/a	chr11:9596149-9596159
40	POLR2A	chr11:9593721-9599676	H1-hESC	embryonic stem cell:	n/a	n/a
41	MAX	chr11:9594220-9595784	HCT-116	colon:	n/a	chr11:9594393-9594404 chr11:9594393-9594403 chr11:9595186-9595197 chr11:9595186-9595197 chr11:9595391-9595400 chr11:9594394-9594403 chr11:9595391-9595400 chr11:9594395-9594402 chr11:9594390-9594405 chr11:9595188-9595197 chr11:9594392-9594407 chr11:9595392-9595399
42	SIX5	chr11:9594185-9595033	A549	lung:	n/a	n/a
43	MAX	chr11:9594100-9595655	SK-N-SH	brain:	n/a	chr11:9594393-9594404 chr11:9594393-9594403 chr11:9595186-9595197 chr11:9595186-9595197 chr11:9595391-9595400 chr11:9594394-9594403 chr11:9595391-9595400 chr11:9594395-9594402 chr11:9594390-9594405 chr11:9595188-9595197 chr11:9594392-9594407 chr11:9595392-9595399
44	ZNF384	chr11:9594217-9595393	K562	blood:	n/a	n/a
45	TCF12	chr11:9594188-9594999	A549	lung:	n/a	n/a
46	SIN3AK20	chr11:9594099-9595589	MCF-7	breast:	n/a	n/a
47	HEY1	chr11:9594133-9595478	HepG2	liver:	n/a	chr11:9595294-9595309 chr11:9595297-9595312 chr11:9595341-9595356 chr11:9594830-9594845
48	FOXA1	chr11:9594186-9594712	HepG2	liver:	n/a	n/a
49	PML	chr11:9594177-9595312	K562	blood:	n/a	n/a
50	POLR2A	chr11:9592789-9600461	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:9112943..9114701-chr11:9593377..9596594,3	MCF-7	breast:
2	chr11:9479099..9485582-chr11:9593306..9599058,18	K562	blood:
3	chr11:9482166..9483015-chr11:9594207..9594915,2	Hela-S3	cervix:
4	chr11:8702253..8704416-chr11:9593339..9594880,2	MCF-7	breast:
5	chr11:9593380..9601954-chr11:9626466..9639393,32	K562	blood:
6	chr11:9571322..9573839-chr11:9593135..9594742,2	K562	blood:
7	chr11:9478618..9485582-chr11:9593299..9599536,13	K562	blood:
8	chr11:9480226..9484903-chr11:9591788..9598525,12	MCF-7	breast:
9	chr11:9593146..9594870-chr11:9635191..9636726,2	MCF-7	breast:

Variant related genes	Relation type
WEE1	TF binding region
ENSG00000166478	Chromatin interaction
ENSG00000166441	Chromatin interaction
ENSG00000175356	Chromatin interaction
ENSG00000268403	Chromatin interaction
ENSG00000243964	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427882	chr11:9431600-9626580	Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv553467	chr11:9518551-9648721	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	esv3365334	chr11:9593876-9597474	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
4	esv3439005	chr11:9593901-9596949	Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
5	esv1105565	chr11:9594240-9594241	ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	n/a
6	nsv29895	chr11:9594242-9594242	Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	n/a
7	esv2219729	chr11:9594242-9594243	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9584200-9594400	Enhancers	Stomach Mucosa	stomach
2	chr11:9584200-9594400	Weak transcription	Spleen	Spleen
3	chr11:9585200-9594400	Weak transcription	Esophagus	oesophagus
4	chr11:9585200-9594400	Weak transcription	Lung	lung
5	chr11:9588000-9594400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr11:9588000-9594400	Weak transcription	Gastric	stomach
7	chr11:9591000-9594400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:9591200-9594400	Weak transcription	Pancreas	Pancrea
9	chr11:9591600-9594400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:9591600-9594600	Weak transcription	Small Intestine	intestine
11	chr11:9591600-9596200	Weak transcription	Fetal Heart	heart
12	chr11:9592200-9594400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:9593600-9595800	Active TSS	iPS-15b Cell Line	embryonic stem cell
14	chr11:9593600-9596200	Active TSS	HUES6 Cell Line	embryonic stem cell
15	chr11:9593600-9596600	Active TSS	HUES64 Cell Line	embryonic stem cell
16	chr11:9593600-9598000	Active TSS	ES-I3 Cell Line	embryonic stem cell
17	chr11:9593800-9594400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr11:9593800-9594400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
19	chr11:9593800-9594400	Active TSS	Skeletal Muscle Female	skeletal muscle
20	chr11:9593800-9594600	Flanking Active TSS	Fetal Muscle Trunk	muscle
21	chr11:9593800-9594600	Flanking Active TSS	Fetal Muscle Leg	muscle
22	chr11:9593800-9594600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
23	chr11:9593800-9594600	Flanking Active TSS	Dnd41	blood
24	chr11:9593800-9594800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr11:9593800-9594800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:9593800-9596400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:9593800-9596400	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr11:9593800-9596400	Active TSS	HepG2	liver
29	chr11:9593800-9596400	Active TSS	Osteobl	bone
30	chr11:9593800-9596600	Active TSS	Brain Hippocampus Middle	brain
31	chr11:9593800-9597200	Active TSS	iPS-18 Cell Line	embryonic stem cell
32	chr11:9593800-9597400	Active TSS	A549	lung
33	chr11:9593800-9597800	Active TSS	H1 Cell Line	embryonic stem cell
34	chr11:9593800-9598200	Active TSS	H9 Cell Line	embryonic stem cell
35	chr11:9593800-9599000	Active TSS	Psoas Muscle	Psoas
36	chr11:9593800-9599600	Active TSS	Brain Germinal Matrix	brain
37	chr11:9593800-9599800	Active TSS	HSMMtube	muscle
38	chr11:9594000-9594400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
39	chr11:9594000-9594400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
40	chr11:9594000-9594400	Active TSS	NH-A	brain
41	chr11:9594000-9594600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr11:9594000-9594600	Active TSS	Stomach Smooth Muscle	stomach
43	chr11:9594000-9594800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
44	chr11:9594000-9594800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
45	chr11:9594000-9594800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
46	chr11:9594000-9594800	Flanking Active TSS	Placenta	Placenta
47	chr11:9594000-9594800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
48	chr11:9594000-9595000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr11:9594000-9595000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:9594000-9596200	Active TSS	Adipose Nuclei	Adipose

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links