Variant report

Variant	rs200504112
Chromosome Location	chr6:29616665-29616666
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:29598640..29604637-chr6:29614654..29620933,9	K562	blood:
2	chr6:29616642..29621245-chr6:29621568..29627231,6	K562	blood:
3	chr6:29615912..29617460-chr6:29617899..29619662,2	MCF-7	breast:
4	chr6:29593197..29596046-chr6:29616000..29618979,4	K562	blood:
5	chr6:29598560..29601918-chr6:29614006..29619393,6	K562	blood:
6	chr6:29615212..29617400-chr6:29662195..29664604,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204655	Chromatin interaction
ENSG00000235238	Chromatin interaction
ENSG00000204681	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758039	chr6:29469101-29672665	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2759411	chr6:29469101-29672665	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv527037	chr6:29615822-29624112	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29609600-29617200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr6:29610000-29617200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr6:29610600-29617200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:29610600-29617400	Weak transcription	K562	blood
5	chr6:29610800-29617200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr6:29611400-29616800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:29612000-29616800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:29615800-29617200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr6:29615800-29617200	Weak transcription	HMEC	breast
10	chr6:29615800-29617400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:29616000-29617200	Weak transcription	NHEK	skin
12	chr6:29616200-29617400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr6:29616400-29617200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr6:29616400-29618600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:29616600-29616800	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr6:29616600-29616800	Enhancers	Primary hematopoietic stem cells	blood
17	chr6:29616600-29616800	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr6:29616600-29617000	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr6:29616600-29617200	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr6:29616600-29617200	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr6:29616600-29617200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr6:29616600-29617200	Enhancers	Primary B cells from cord blood	blood
23	chr6:29616600-29617200	Enhancers	Primary B cells from peripheral blood	blood
24	chr6:29616600-29617200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:29616600-29617400	Enhancers	H1 Cell Line	embryonic stem cell
26	chr6:29616600-29617400	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr6:29616600-29617400	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr6:29616600-29617400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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