Variant report

Variant	rs200509455
Chromosome Location	chr8:103449472-103449473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033829	chr8:103110057-103525696	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv1025935	chr8:103199207-103468322	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv891244	chr8:103309862-103483466	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv831412	chr8:103337196-103536397	Genic enhancers Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	esv33118	chr8:103358567-104068172	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
6	nsv1023938	chr8:103369215-103538708	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
7	nsv972564	chr8:103448714-103461127	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:103447000-103449800	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr8:103447000-103449800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:103447200-103450800	Enhancers	H1 Cell Line	embryonic stem cell
4	chr8:103447400-103449600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:103448400-103453400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:103448800-103449600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr8:103448800-103449600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr8:103448800-103450400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:103449200-103449600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr8:103449200-103449600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr8:103449200-103449600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr8:103449200-103449600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr8:103449200-103449600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:103449400-103449600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr8:103449400-103449600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr8:103449400-103449800	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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